charles-plessy / CAGEr

Mirror of Bioconductor's CAGEr package repository
https://bioconductor.org/packages/CAGEr
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Parallel load of libraries can be sluggish. #107

Open charles-plessy opened 1 year ago

charles-plessy commented 1 year ago

On large libraries ( ~100 million read pairs) in BAM format, parallel load is sluggish. I could not yet track the issue, and I do not know if it also affect other formats (single-end BAM, BED12, ...).

Parallel load was originally developed for loading shallow single-cell libraries in BED12 format.