charles-plessy / CAGEr

Mirror of Bioconductor's CAGEr package repository
https://bioconductor.org/packages/CAGEr
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annotateCTSS method for TxDB objects #119

Closed charles-plessy closed 3 months ago

charles-plessy commented 3 months ago

Draft code to use TxDB objects such as TxDb.Scerevisiae.UCSC.sacCer3.sgdGene.

There is considerable overlap between the "2annot" functions and between the "annotateCTSS" methods. It would be best to reduce it while finalising this branch and before merging it to the master one.