We consider "promoter" the 1-kb window around the start site of annotated transcripts. In compact genomes this is really too broad.
Maybe we can add a ... argument to plotAnnot and ranges2annot, to allow the user to pass it to promoters. Or more directly we can give upstream=500, downstream=500.
We consider "promoter" the 1-kb window around the start site of annotated transcripts. In compact genomes this is really too broad.
Maybe we can add a
...argument toplotAnnotandranges2annot, to allow the user to pass it topromoters. Or more directly we can giveupstream=500, downstream=500.