charlesrocabert / gbapy

Growth balance analysis in Python
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Alteration criteria : small difference in max. growthrate. and protein #4

Open fumer100 opened 2 months ago

fumer100 commented 2 months ago

I have tested out the $\mu$ - alteration criteria. I have noticed, that there is a difference in max. growthrate and protein between the trajectory with and without this criteria.

The $\mu$-criteria I am talking about: image

Without the $\mu$-criteria (checking if gradient = 0): image

With the $\mu$-criteria: image

As you can see, there is a small difference in $\mu$ but a rather "big" difference in Protein. What should I do about it and what would be more realisitc and representative in this case? I thought of decreasing the "convergance tolerance". Or do these small differences matter?

fumer100 commented 2 months ago

Ok, i have just adjusted the stable count, so the tragectory wouldnt stop before consistency and gradient =0. It gives the same results now for both versions.