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chasewnelson / SNPGenie

Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
GNU General Public License v3.0
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Hello, I am trying to run snpgenie_wthin_group.pl after installing Parallel::ForkManager (with -force option) and get the error message: MacBookPro:SNPGenie-master julia$ perl snpgenie_within_group.pl --fasta_file_name=compl_cons_ORF --gtf_file_name=GGS.gtf Can't locate Parallel/ForkManager.pm in @INC (@INC contains: /Library/Perl/5.16/darwin-thread-multi-2level /Library/Perl/5.16 /Network/Library/Perl/5.16/darwin-thread-multi-2level /Network/Library/Perl/5.16 /Library/Perl/Updates/5.16.2/darwin-thread-multi-2level /Library/Perl/Updates/5.16.2 /System/Library/Perl/5.16/darwin-thread-multi-2level /System/Library/Perl/5.16 /System/Library/Perl/Extras/5.16/darwin-thread-multi-2level /System/Library/Perl/Extras/5.16 .) at snpgenie_within_group.pl line 62. BEGIN failed--compilation aborted at snpgenie_within_group.pl line 62. Do you have any idea what I can do to fix it? Thanks!!! #26

Closed jhillung closed 4 years ago

singing-scientist commented 4 years ago

Greetings! Unfortunately, I do not yet have sufficient details to answer. Did you use CPAN to install ForkManager?

jhillung commented 4 years ago

Hi, yes I used CPAN, but I had a error and had to use -force option as suggestion of the CPAN. Then it was apparently installed. Thanks!

Von: Chase W. Nelson notifications@github.com Gesendet: Donnerstag, 9. Januar 2020 21:11 An: chasewnelson/SNPGenie SNPGenie@noreply.github.com Cc: jhillung juliahillung@hotmail.com; Author author@noreply.github.com Betreff: Re: [chasewnelson/SNPGenie] Hello, I am trying to run snpgenie_wthin_group.pl after installing Parallel::ForkManager (with -force option) and get the error message: MacBookPro:SNPGenie-master julia$ perl snpgenie_within_group.pl --fasta_file_name=comp...

Greetings! Unfortunately, I do not yet have sufficient details to answer. Did you use CPAN to install ForkManager?

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singing-scientist commented 4 years ago

I am very glad to hear that it worked out! Thanks for using SNPGenie :-)