chembl / GLaDOS

Web Interface for ChEMBL @ EMBL-EBI
https://www.ebi.ac.uk/chembl/
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Cross reference link name should be Expression Atlas and not ArrayExpress #1301

Closed pcm32 closed 8 months ago

pcm32 commented 2 years ago

Hi there,

On your cross references, you are linking to the expression of genes at our resource (Expression Atlas), which we really appreciate! But currently it says there "ArrayExpress" in the label of the link, where it should read "Expression Atlas" instead:

image

Could you please amend this? The link works fine, it is just the name of the resource.

Thanks!

nclopezo commented 2 years ago

Hi Pablo,

Thank you for your feedback, this has been fixed, along with the way it gets the reference from the ChEMBL data, you can see it here:

https://www.ebi.ac.uk/chembl/target_report_card/CHEMBL3774298/

pcm32 commented 2 years ago

Thanks!

On 11 May 2022, at 09:51, David Mendez @.***> wrote:

Hi Pablo,

Thank you for your feedback, this has been fixed, along with the way it gets the reference from the ChEMBL data, you can see it here:

https://www.ebi.ac.uk/chembl/target_report_card/CHEMBL3774298/ https://www.ebi.ac.uk/chembl/target_report_card/CHEMBL3774298/ — Reply to this email directly, view it on GitHub https://github.com/chembl/GLaDOS/issues/1301#issuecomment-1123382431, or unsubscribe https://github.com/notifications/unsubscribe-auth/AACZ6XQBSSW6NQVAAJQ5DADVJNYHXANCNFSM5VOVHFDA. You are receiving this because you authored the thread.

Emma-Manners commented 8 months ago

@nclopezo

Although the cross reference Iink works fine and the resource name is correct, I noticed that we now use the UniProt accession in the gene cross references rather than the ENSEMBL_ID. We previously used the ENSEMBL_ID. Is this correct?

nclopezo commented 8 months ago

Those references don't seem to have any further processing, they are shown as they come from elasticsearch:

https://www.ebi.ac.uk/chembl/interface_api/es_proxy/es_data/get_es_document/chembl_target/CHEMBL3774298?source=target_components.target_component_xrefs

Screenshot 2023-11-02 at 14 56 53

Is this what you are asking about?

Emma-Manners commented 8 months ago

Thanks. The above screenshot shows an Ensembl_ID but I agree that the XREFs haven't changed in the database and are working.