Open slvrshot opened 7 years ago
Does REAGO have some sort of maximum length? Is 150bp large. I am very confused about this error. The script finishes but it doesn't produce anything. And the -memlimit message is concerning.
Thu Feb 23 18:34:43 2017 Recovering 16S rRNAs... sh: line 1: 41242 Abort trap: 6 gt readjoiner overlap -memlimit 100MB -q -l 105 -readset sample_out/rj/subgraph_temp.set > /dev/null 2>&1 sh: line 1: 41248 Abort trap: 6 gt readjoiner overlap -memlimit 100MB -q -l 105 -readset sample_out/rj/subgraph_temp.set > /dev/null 2>&1 sh: line 1: 41308 Abort trap: 6 gt readjoiner overlap -memlimit 100MB -q -l 105 -readset sample_out/rj/subgraph_temp.set > /dev/null 2>&1 sh: line 1: 41323 Abort trap: 6 gt readjoiner overlap -memlimit 100MB -q -l 105 -readset sample_out/rj/subgraph_temp.set > /dev/null 2>&1 sh: line 1: 41333 Abort trap: 6 gt readjoiner overlap -memlimit 100MB -q -l 105 -readset sample_out/rj/subgraph_temp.set > /dev/null 2>&1 Thu Feb 23 18:34:46 2017 Scaffolding on short 16S rRNA segments... Thu Feb 23 18:34:46 2017 Write to Files... Thu Feb 23 18:34:46 2017 Done.
Does REAGO have some sort of maximum length? Is 150bp large. I am very confused about this error. The script finishes but it doesn't produce anything. And the -memlimit message is concerning.
Thu Feb 23 18:34:43 2017 Recovering 16S rRNAs... sh: line 1: 41242 Abort trap: 6 gt readjoiner overlap -memlimit 100MB -q -l 105 -readset sample_out/rj/subgraph_temp.set > /dev/null 2>&1 sh: line 1: 41248 Abort trap: 6 gt readjoiner overlap -memlimit 100MB -q -l 105 -readset sample_out/rj/subgraph_temp.set > /dev/null 2>&1 sh: line 1: 41308 Abort trap: 6 gt readjoiner overlap -memlimit 100MB -q -l 105 -readset sample_out/rj/subgraph_temp.set > /dev/null 2>&1 sh: line 1: 41323 Abort trap: 6 gt readjoiner overlap -memlimit 100MB -q -l 105 -readset sample_out/rj/subgraph_temp.set > /dev/null 2>&1 sh: line 1: 41333 Abort trap: 6 gt readjoiner overlap -memlimit 100MB -q -l 105 -readset sample_out/rj/subgraph_temp.set > /dev/null 2>&1 Thu Feb 23 18:34:46 2017 Scaffolding on short 16S rRNA segments... Thu Feb 23 18:34:46 2017 Write to Files... Thu Feb 23 18:34:46 2017 Done.