changchuanjun
commented
6 months ago @Lithops123 Hello,I also met this problem when I run geta pipeline.Have you sloved this problem?I am looking forward to your reply sincerely
Open Lithops123 opened 1 year ago
changchuanjun
commented
6 months ago @Lithops123 Hello,I also met this problem when I run geta pipeline.Have you sloved this problem?I am looking forward to your reply sincerely
Step 3: Transcript PWD: ~/3_geta/3/p/out.tmp/3.transcript CMD(Skipped): ~/software/geta-geta-2.4.12//bin/split_sam_from_non_aligned_region ../2.hisat2/hisat2.sorted.sam splited_sam_out 10 > splited_sam_files.list Thu Feb 23 15:12:44 2023: CMD: ParaFly -c command.sam2transfrag.list -CPU 30 &> /dev/null CMD(Skipped): ParaFly -c command.sam2transfrag.list -CPU 30 &> /dev/null Thu Feb 23 15:41:25 2023: CMD: ~/software/geta-geta-2.4.12//TransDecoder-v5.5.0/TransDecoder.LongOrfs -m 100 -G universal -t transfrag.strand.fasta -S &> /dev/null failed to execute: ~/software/geta-geta-2.4.12//TransDecoder-v5.5.0/TransDecoder.LongOrfs -m 100 -G universal -t transfrag.strand.fasta -S &> /dev/null 老师请问一下 遇到这种情况是什么原因呢 该怎么解决