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chenlianfu / geta

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Can GETA be used without RNA-seq data？ #5

Open CAShuangchao opened 3 years ago

CAShuangchao commented 3 years ago

Hi, May I ask you, Can GETA be used for annotation if RNA-seq data is not available？

Thank you Huangchao

CrawlingSponge commented 3 years ago

i got the same issue, and i just ignore the trans. annotated parts (step 2,3), then treated the augustus training gene sets from genewise annotated genes as tranning candidate genes. then, i perfomred the busco of these annotated genes from augustus and found the busco larger than 85%, but another issue is about the accuracy i am not sure about this! hopefully the auther could explain for us, many thanks!