Closed JerryZhang9611 closed 3 years ago
Dear Zhang
First, thank you for noticing the errors in the manual. They have been corrected.
The error you encountered suggest that something may have gone wrong in the build process for PETSc. PETSc is a very complex package and does not belong to me, and I can't always catch everything that goes wrong since I'm running their configure script from within mine. For right now, the most useful thing would be to delete the 'extern' folder and run the configure script again, and send me the full output. If there's an error happening there, it should print to the screen even if it doesn't stop the configure script from running to completion.
Best regards -Claus Hetzer
From: JerryZhang9611 @.> Sent: Thursday, October 14, 2021 6:50 AM To: chetzer-ncpa/ncpaprop-release @.> Cc: Subscribed @.***> Subject: [chetzer-ncpa/ncpaprop-release] PETSc error occurred (#4)
[EXTERNAL]
Hello
First of all, thank you for sharing your code. I have met a problem in running the first sample of Modess:
../bin/Modess --singleprop --atmosfile NCPA_canonical_profile_zuvwtdp.dat --azimuth 90 --freq 0.1
Now processing azimuth = 90 (1 of 1)
WKB fix: new phasevelocity minimum= 297.64 m/s (was 206.86 m/s)
-> Normal mode solution at 0.100 Hz and 90.00 deg (43 modes)... -> Discrete spectrum: 297.64 m/s to 429.16 m/s [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: No support for this operation for this object type [0]PETSC ERROR: Mat type seqaij [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.16.0, unknown [0]PETSC ERROR: Unknown Name on a arch-linux-c-real named ubuntu by zty Thu Oct 14 05:51:10 2021 [0]PETSC ERROR: Configure options PETSC_ARCH=arch-linux-c-real PETSC_DIR=/home/zty/ncpaprop/extern/petsc --with-fc=0 --with-debugging=0 --with-mpi=0 --download-f2cblaslapack=1 [0]PETSC ERROR: #1 MatGetInertia() at /home/zty/ncpaprop/extern/petsc/src/mat/interface/matrix.c:8901 [0]PETSC ERROR: #2 EPSSliceGetInertia() at /home/zty/ncpaprop/extern/slepc/slepc-3.16.0/src/eps/impls/krylov/krylovschur/ks-slice.c:272 [0]PETSC ERROR: #3 EPSSetUp_KrylovSchur_Slice() at /home/zty/ncpaprop/extern/slepc/slepc-3.16.0/src/eps/impls/krylov/krylovschur/ks-slice.c:410 [0]PETSC ERROR: #4 EPSSetUp_KrylovSchur() at /home/zty/ncpaprop/extern/slepc/slepc-3.16.0/src/eps/impls/krylov/krylovschur/krylovschur.c:147 [0]PETSC ERROR: #5 EPSSetUp() at /home/zty/ncpaprop/extern/slepc/slepc-3.16.0/src/eps/interface/epssetup.c:313 [0]PETSC ERROR: #6 EPSSliceGetEPS() at /home/zty/ncpaprop/extern/slepc/slepc-3.16.0/src/eps/impls/krylov/krylovschur/ks-slice.c:232 [0]PETSC ERROR: #7 EPSSetUp_KrylovSchur_Slice() at /home/zty/ncpaprop/extern/slepc/slepc-3.16.0/src/eps/impls/krylov/krylovschur/ks-slice.c:355 [0]PETSC ERROR: #8 EPSSetUp_KrylovSchur() at /home/zty/ncpaprop/extern/slepc/slepc-3.16.0/src/eps/impls/krylov/krylovschur/krylovschur.c:147 [0]PETSC ERROR: #9 EPSSetUp() at /home/zty/ncpaprop/extern/slepc/slepc-3.16.0/src/eps/interface/epssetup.c:313 [0]PETSC ERROR: #10 EPSSolve() at /home/zty/ncpaprop/extern/slepc/slepc-3.16.0/src/eps/interface/epssolve.c:136 [0]PETSC ERROR: #11 doESSCalculation() at EigenEngine.cpp:122
I installed PETSc by
./configure --with-localpetsc --enable-autodependencies
Could you please offer me some help?
============================================================
By the way, I found some tiny mistakes in the manual:
Manual still gives the previous link of the git in page 5, section 2.2.1
Spelling mistakes in command argument "--dispersion_file" of the first example of ModBB in page 30
Thanks,
Zhang
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Dear Hetzer
Thank you for replying to the problem I encountered.
Following your suggestion, I deleted the 'extern' folder and ran the configure and make script again. I didn't find any obvious problems. The full terminal output of configure and make is in the attachment. Please check it out, if you have time.
Sincerely,
Zhang
发件人: Claus Hetzer 发送时间: 2021年10月15日 2:20 收件人: chetzer-ncpa/ncpaprop-release 抄送: JerryZhang9611; Author 主题: Re: [chetzer-ncpa/ncpaprop-release] PETSc error occurred in the firstsample of Modess (#4)
Dear Zhang
First, thank you for noticing the errors in the manual. They have been corrected.
The error you encountered suggest that something may have gone wrong in the build process for PETSc. PETSc is a very complex package and does not belong to me, and I can't always catch everything that goes wrong since I'm running their configure script from within mine. For right now, the most useful thing would be to delete the 'extern' folder and run the configure script again, and send me the full output. If there's an error happening there, it should print to the screen even if it doesn't stop the configure script from running to completion.
Best regards -Claus Hetzer
From: JerryZhang9611 @.> Sent: Thursday, October 14, 2021 6:50 AM To: chetzer-ncpa/ncpaprop-release @.> Cc: Subscribed @.***> Subject: [chetzer-ncpa/ncpaprop-release] PETSc error occurred (#4)
[EXTERNAL]
Hello
First of all, thank you for sharing your code. I have met a problem in running the first sample of Modess:
../bin/Modess --singleprop --atmosfile NCPA_canonical_profile_zuvwtdp.dat --azimuth 90 --freq 0.1
Now processing azimuth = 90 (1 of 1)
WKB fix: new phasevelocity minimum= 297.64 m/s (was 206.86 m/s)
-> Normal mode solution at 0.100 Hz and 90.00 deg (43 modes)... -> Discrete spectrum: 297.64 m/s to 429.16 m/s [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: No support for this operation for this object type [0]PETSC ERROR: Mat type seqaij [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.16.0, unknown [0]PETSC ERROR: Unknown Name on a arch-linux-c-real named ubuntu by zty Thu Oct 14 05:51:10 2021 [0]PETSC ERROR: Configure options PETSC_ARCH=arch-linux-c-real PETSC_DIR=/home/zty/ncpaprop/extern/petsc --with-fc=0 --with-debugging=0 --with-mpi=0 --download-f2cblaslapack=1 [0]PETSC ERROR: #1 MatGetInertia() at /home/zty/ncpaprop/extern/petsc/src/mat/interface/matrix.c:8901 [0]PETSC ERROR: #2 EPSSliceGetInertia() at /home/zty/ncpaprop/extern/slepc/slepc-3.16.0/src/eps/impls/krylov/krylovschur/ks-slice.c:272 [0]PETSC ERROR: #3 EPSSetUp_KrylovSchur_Slice() at /home/zty/ncpaprop/extern/slepc/slepc-3.16.0/src/eps/impls/krylov/krylovschur/ks-slice.c:410 [0]PETSC ERROR: #4 EPSSetUp_KrylovSchur() at /home/zty/ncpaprop/extern/slepc/slepc-3.16.0/src/eps/impls/krylov/krylovschur/krylovschur.c:147 [0]PETSC ERROR: #5 EPSSetUp() at /home/zty/ncpaprop/extern/slepc/slepc-3.16.0/src/eps/interface/epssetup.c:313 [0]PETSC ERROR: #6 EPSSliceGetEPS() at /home/zty/ncpaprop/extern/slepc/slepc-3.16.0/src/eps/impls/krylov/krylovschur/ks-slice.c:232 [0]PETSC ERROR: #7 EPSSetUp_KrylovSchur_Slice() at /home/zty/ncpaprop/extern/slepc/slepc-3.16.0/src/eps/impls/krylov/krylovschur/ks-slice.c:355 [0]PETSC ERROR: #8 EPSSetUp_KrylovSchur() at /home/zty/ncpaprop/extern/slepc/slepc-3.16.0/src/eps/impls/krylov/krylovschur/krylovschur.c:147 [0]PETSC ERROR: #9 EPSSetUp() at /home/zty/ncpaprop/extern/slepc/slepc-3.16.0/src/eps/interface/epssetup.c:313 [0]PETSC ERROR: #10 EPSSolve() at /home/zty/ncpaprop/extern/slepc/slepc-3.16.0/src/eps/interface/epssolve.c:136 [0]PETSC ERROR: #11 doESSCalculation() at EigenEngine.cpp:122
I installed PETSc by
./configure --with-localpetsc --enable-autodependencies
Could you please offer me some help?
============================================================
By the way, I found some tiny mistakes in the manual:
Manual still gives the previous link of the git in page 5, section 2.2.1
Spelling mistakes in command argument "--dispersion_file" of the first example of ModBB in page 30
Thanks,
Zhang
— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHubhttps://github.com/chetzer-ncpa/ncpaprop-release/issues/4, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AEORUCLYVKAXN2JH5DAJZJDUG3N2TANCNFSM5F7W4GSQ. Triage notifications on the go with GitHub Mobile for iOShttps://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Androidhttps://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.
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Configuring PETSc to compile on your system
See documentation/faq.html and documentation/bugreporting.html for help with installation problems. Please send EVERYTHING printed out below when reporting problems. Please check the mailing list archives and consider subscribing.
https://petsc.org/release/community/mailing/
Using configure Options: PETSC_ARCH=arch-linux-c-real PETSC_DIR=/home/zty/ncpaprop/extern/petsc --with-fc=0 --with-debugging=0 --with-mpi=0 --download-f2cblaslapack=1 Using configuration flags:
CXX arch-linux-c-real/obj/sys/dll/cxx/demangle.o
CXX arch-linux-c-real/obj/sys/objects/device/interface/dcontext.o
CXX arch-linux-c-real/obj/sys/objects/device/interface/device.o
CXX arch-linux-c-real/obj/sys/objects/device/interface/devicereg.o
CXX arch-linux-c-real/obj/sys/objects/device/interface/cupminterface.o
CC arch-linux-c-real/obj/sys/fileio/ftest.o
CC arch-linux-c-real/obj/sys/fileio/ghome.o
CC arch-linux-c-real/obj/sys/fileio/mpiuopen.o
CC arch-linux-c-real/obj/sys/fileio/rpath.o
CC arch-linux-c-real/obj/sys/fileio/fpath.o
CXX arch-linux-c-real/obj/sys/objects/device/impls/cupm/cupmdevice.o
CC arch-linux-c-real/obj/sys/fileio/fwd.o
CC arch-linux-c-real/obj/sys/fileio/grpath.o
CC arch-linux-c-real/obj/sys/fileio/mprint.o
CC arch-linux-c-real/obj/sys/fileio/sysio.o
CC arch-linux-c-real/obj/sys/fileio/smatlab.o
CC arch-linux-c-real/obj/sys/fileio/fretrieve.o
CC arch-linux-c-real/obj/sys/fileio/fdir.o
CC arch-linux-c-real/obj/sys/totalview/tv_data_display.o
CC arch-linux-c-real/obj/sys/utils/arch.o
CC arch-linux-c-real/obj/sys/utils/fuser.o
CC arch-linux-c-real/obj/sys/utils/fhost.o
CC arch-linux-c-real/obj/sys/utils/memc.o
CC arch-linux-c-real/obj/sys/utils/psleep.o
CC arch-linux-c-real/obj/sys/utils/mpiu.o
CC arch-linux-c-real/obj/sys/utils/sortd.o
CC arch-linux-c-real/obj/sys/utils/sorti.o
CC arch-linux-c-real/obj/sys/utils/str.o
CC arch-linux-c-real/obj/sys/utils/sortip.o
CC arch-linux-c-real/obj/sys/utils/pbarrier.o
CC arch-linux-c-real/obj/sys/utils/sortso.o
CC arch-linux-c-real/obj/sys/utils/pdisplay.o
CC arch-linux-c-real/obj/sys/utils/psplit.o
CC arch-linux-c-real/obj/sys/utils/ctable.o
CC arch-linux-c-real/obj/sys/utils/sseenabled.o
CC arch-linux-c-real/obj/sys/utils/mpitr.o
CC arch-linux-c-real/obj/sys/utils/mpimesg.o
CC arch-linux-c-real/obj/sys/utils/mpilong.o
CC arch-linux-c-real/obj/sys/utils/mathinf.o
CC arch-linux-c-real/obj/sys/utils/matheq.o
CC arch-linux-c-real/obj/sys/utils/mathclose.o
CC arch-linux-c-real/obj/sys/utils/mathfit.o
CC arch-linux-c-real/obj/sys/utils/segbuffer.o
CC arch-linux-c-real/obj/sys/utils/mpits.o
CC arch-linux-c-real/obj/sys/utils/mpishm.o
CC arch-linux-c-real/obj/sys/python/pythonsys.o
CC arch-linux-c-real/obj/sys/error/adebug.o
CC arch-linux-c-real/obj/sys/error/errtrace.o
CC arch-linux-c-real/obj/sys/error/err.o
CC arch-linux-c-real/obj/sys/error/errabort.o
CC arch-linux-c-real/obj/sys/error/errstop.o
CC arch-linux-c-real/obj/sys/error/fp.o
CC arch-linux-c-real/obj/sys/error/signal.o
CC arch-linux-c-real/obj/sys/error/pstack.o
CC arch-linux-c-real/obj/sys/error/checkptr.o
CC arch-linux-c-real/obj/sys/logging/xmllogevent.o
CC arch-linux-c-real/obj/sys/logging/xmlviewer.o
CC arch-linux-c-real/obj/sys/logging/plog.o
CC arch-linux-c-real/obj/sys/logging/utils/classlog.o
CC arch-linux-c-real/obj/sys/logging/utils/stagelog.o
CC arch-linux-c-real/obj/sys/logging/utils/stack.o
CC arch-linux-c-real/obj/sys/mpiuni/mpi.o
CC arch-linux-c-real/obj/sys/logging/utils/eventlog.o
CC arch-linux-c-real/obj/sys/mpiuni/mpitime.o
CC arch-linux-c-real/obj/sys/memory/mal.o
CC arch-linux-c-real/obj/sys/memory/mem.o
CC arch-linux-c-real/obj/sys/memory/mhbw.o
CC arch-linux-c-real/obj/sys/info/verboseinfo.o
CC arch-linux-c-real/obj/sys/memory/mtr.o
CC arch-linux-c-real/obj/sys/dll/dlimpl.o
CC arch-linux-c-real/obj/sys/dll/dl.o
CC arch-linux-c-real/obj/sys/dll/reg.o
CC arch-linux-c-real/obj/sys/time/cputime.o
CC arch-linux-c-real/obj/sys/time/fdate.o
CC arch-linux-c-real/obj/sys/objects/version.o
CC arch-linux-c-real/obj/sys/objects/gcomm.o
CC arch-linux-c-real/obj/sys/objects/gtype.o
CC arch-linux-c-real/obj/sys/objects/olist.o
CC arch-linux-c-real/obj/sys/objects/pname.o
CC arch-linux-c-real/obj/sys/objects/tagm.o
CC arch-linux-c-real/obj/sys/objects/destroy.o
CC arch-linux-c-real/obj/sys/objects/gcookie.o
CC arch-linux-c-real/obj/sys/objects/inherit.o
CC arch-linux-c-real/obj/sys/objects/options.o
CC arch-linux-c-real/obj/sys/objects/pgname.o
CC arch-linux-c-real/obj/sys/objects/prefix.o
CC arch-linux-c-real/obj/sys/objects/init.o
CC arch-linux-c-real/obj/sys/objects/optionsyaml.o
CC arch-linux-c-real/obj/sys/objects/pinit.o
CC arch-linux-c-real/obj/sys/objects/ptype.o
CC arch-linux-c-real/obj/sys/objects/state.o
CC arch-linux-c-real/obj/sys/objects/subcomm.o
CC arch-linux-c-real/obj/sys/objects/fcallback.o
CC arch-linux-c-real/obj/sys/objects/aoptions.o
CC arch-linux-c-real/obj/sys/objects/package.o
CC arch-linux-c-real/obj/sys/classes/draw/interface/draw.o
CC arch-linux-c-real/obj/sys/classes/draw/interface/dcoor.o
CC arch-linux-c-real/obj/sys/classes/bag/bag.o
CC arch-linux-c-real/obj/sys/classes/draw/interface/dtext.o
CC arch-linux-c-real/obj/sys/classes/draw/interface/dpoint.o
CC arch-linux-c-real/obj/sys/classes/draw/interface/dmarker.o
CC arch-linux-c-real/obj/sys/classes/draw/interface/dpause.o
CC arch-linux-c-real/obj/sys/classes/draw/interface/dline.o
CC arch-linux-c-real/obj/sys/classes/draw/interface/dflush.o
CC arch-linux-c-real/obj/sys/classes/draw/interface/dsave.o
CC arch-linux-c-real/obj/sys/classes/draw/interface/dclear.o
CC arch-linux-c-real/obj/sys/classes/draw/interface/dmouse.o
CC arch-linux-c-real/obj/sys/classes/draw/interface/dviewp.o
CC arch-linux-c-real/obj/sys/classes/draw/interface/dtri.o
CC arch-linux-c-real/obj/sys/classes/draw/interface/drect.o
CC arch-linux-c-real/obj/sys/classes/draw/interface/dellipse.o
CC arch-linux-c-real/obj/sys/classes/draw/interface/drawregall.o
CC arch-linux-c-real/obj/sys/classes/draw/interface/drawreg.o
CC arch-linux-c-real/obj/sys/classes/draw/utils/axis.o
CC arch-linux-c-real/obj/sys/classes/draw/utils/lg.o
CC arch-linux-c-real/obj/sys/classes/draw/utils/dscatter.o
CC arch-linux-c-real/obj/sys/classes/draw/utils/zoom.o
CC arch-linux-c-real/obj/sys/classes/draw/utils/hists.o
CC arch-linux-c-real/obj/sys/classes/draw/utils/cmap.o
CC arch-linux-c-real/obj/sys/classes/draw/utils/lgc.o
CC arch-linux-c-real/obj/sys/classes/draw/utils/axisc.o
CC arch-linux-c-real/obj/sys/classes/draw/utils/bars.o
CC arch-linux-c-real/obj/sys/classes/draw/utils/image.o
CC arch-linux-c-real/obj/sys/classes/draw/impls/tikz/tikz.o
CC arch-linux-c-real/obj/sys/classes/draw/impls/null/drawnull.o
CC arch-linux-c-real/obj/sys/classes/viewer/interface/view.o
CC arch-linux-c-real/obj/sys/classes/draw/impls/image/drawimage.o
CC arch-linux-c-real/obj/sys/classes/viewer/interface/flush.o
CC arch-linux-c-real/obj/sys/classes/viewer/interface/viewregall.o
CC arch-linux-c-real/obj/sys/classes/viewer/interface/viewa.o
CC arch-linux-c-real/obj/sys/classes/viewer/interface/dlregispetsc.o
CC arch-linux-c-real/obj/sys/classes/viewer/interface/viewreg.o
CC arch-linux-c-real/obj/sys/classes/viewer/interface/viewers.o
CC arch-linux-c-real/obj/sys/classes/viewer/interface/dupl.o
CC arch-linux-c-real/obj/sys/classes/viewer/impls/ascii/vcreatea.o
CC arch-linux-c-real/obj/sys/classes/viewer/impls/vu/petscvu.o
CC arch-linux-c-real/obj/sys/classes/viewer/impls/ascii/filev.o
CC arch-linux-c-real/obj/sys/classes/viewer/impls/socket/send.o
CC arch-linux-c-real/obj/sys/classes/viewer/impls/vtk/vtkv.o
CC arch-linux-c-real/obj/sys/classes/viewer/impls/draw/drawv.o
CC arch-linux-c-real/obj/sys/classes/viewer/impls/binary/binv.o
CC arch-linux-c-real/obj/sys/classes/viewer/impls/string/stringv.o
CC arch-linux-c-real/obj/sys/classes/random/interface/random.o
CC arch-linux-c-real/obj/sys/classes/random/interface/randreg.o
CC arch-linux-c-real/obj/sys/classes/random/interface/dlregisrand.o
CC arch-linux-c-real/obj/sys/classes/viewer/impls/glvis/glvis.o
CC arch-linux-c-real/obj/sys/classes/random/interface/randomc.o
CC arch-linux-c-real/obj/sys/classes/random/impls/rand48/rand48.o
CC arch-linux-c-real/obj/sys/classes/random/impls/rand/rand.o
CC arch-linux-c-real/obj/sys/classes/random/impls/rander48/rander48.o
CC arch-linux-c-real/obj/vec/vec/impls/mpi/pbvec.o
CC arch-linux-c-real/obj/vec/vec/impls/mpi/pvec2.o
CC arch-linux-c-real/obj/vec/vec/impls/mpi/pdvec.o
CC arch-linux-c-real/obj/vec/vec/impls/mpi/vmpicr.o
CC arch-linux-c-real/obj/vec/vec/impls/mpi/commonmpvec.o
CC arch-linux-c-real/obj/vec/vec/impls/seq/bvec1.o
CC arch-linux-c-real/obj/vec/vec/impls/seq/bvec2.o
CC arch-linux-c-real/obj/vec/vec/impls/seq/vseqcr.o
CC arch-linux-c-real/obj/vec/vec/impls/seq/dvec2.o
CC arch-linux-c-real/obj/vec/vec/impls/seq/bvec3.o
CC arch-linux-c-real/obj/vec/vec/impls/shared/shvec.o
CC arch-linux-c-real/obj/vec/vec/interface/vector.o
CC arch-linux-c-real/obj/vec/vec/impls/nest/vecnest.o
CC arch-linux-c-real/obj/vec/vec/interface/veccreate.o
CC arch-linux-c-real/obj/vec/vec/interface/vecreg.o
CC arch-linux-c-real/obj/vec/vec/interface/vecregall.o
CC arch-linux-c-real/obj/vec/vec/interface/dlregisvec.o
CC arch-linux-c-real/obj/vec/vec/utils/vinv.o
CC arch-linux-c-real/obj/vec/vec/utils/vecio.o
CC arch-linux-c-real/obj/vec/vec/interface/rvector.o
CC arch-linux-c-real/obj/vec/vec/utils/vecstash.o
CC arch-linux-c-real/obj/vec/vec/utils/comb.o
CC arch-linux-c-real/obj/vec/vec/utils/vecs.o
CC arch-linux-c-real/obj/vec/vec/utils/vsection.o
CC arch-linux-c-real/obj/vec/vec/utils/vecglvis.o
CC arch-linux-c-real/obj/vec/vec/utils/projection.o
CC arch-linux-c-real/obj/vec/vec/utils/tagger/interface/tagger.o
CC arch-linux-c-real/obj/vec/vec/utils/tagger/interface/taggerregi.o
CC arch-linux-c-real/obj/vec/vec/utils/tagger/interface/dlregistagger.o
CC arch-linux-c-real/obj/vec/vec/utils/tagger/impls/simple.o
CC arch-linux-c-real/obj/vec/vec/utils/tagger/impls/absolute.o
CC arch-linux-c-real/obj/vec/vec/utils/tagger/impls/relative.o
CC arch-linux-c-real/obj/vec/vec/utils/tagger/impls/andor.o
CC arch-linux-c-real/obj/vec/vec/utils/tagger/impls/cdf.o
CC arch-linux-c-real/obj/vec/vec/utils/tagger/impls/or.o
CC arch-linux-c-real/obj/vec/vec/utils/tagger/impls/and.o
CC arch-linux-c-real/obj/vec/pf/interface/pfall.o
CC arch-linux-c-real/obj/vec/pf/interface/pf.o
CC arch-linux-c-real/obj/vec/pf/impls/constant/const.o
CC arch-linux-c-real/obj/vec/pf/impls/string/cstring.o
CC arch-linux-c-real/obj/vec/is/ao/interface/ao.o
CC arch-linux-c-real/obj/vec/is/ao/interface/dlregisdm.o
CC arch-linux-c-real/obj/vec/is/ao/interface/aoreg.o
CC arch-linux-c-real/obj/vec/is/ao/interface/aoregall.o
CC arch-linux-c-real/obj/vec/is/ao/impls/basic/aobasic.o
CC arch-linux-c-real/obj/vec/is/ao/impls/memscalable/aomemscalable.o
CC arch-linux-c-real/obj/vec/is/ao/impls/mapping/aomapping.o
CC arch-linux-c-real/obj/vec/is/sf/impls/basic/sfbasic.o
CC arch-linux-c-real/obj/vec/is/sf/impls/basic/sfmpi.o
CC arch-linux-c-real/obj/vec/is/sf/impls/basic/neighbor/sfneighbor.o
CC arch-linux-c-real/obj/vec/is/sf/impls/basic/gather/sfgather.o
CC arch-linux-c-real/obj/vec/is/sf/impls/basic/allgather/sfallgather.o
CC arch-linux-c-real/obj/vec/is/sf/impls/basic/gatherv/sfgatherv.o
CC arch-linux-c-real/obj/vec/is/sf/impls/basic/alltoall/sfalltoall.o
CC arch-linux-c-real/obj/vec/is/sf/impls/basic/allgatherv/sfallgatherv.o
CC arch-linux-c-real/obj/vec/is/sf/interface/dlregissf.o
CC arch-linux-c-real/obj/vec/is/sf/interface/sfregi.o
CC arch-linux-c-real/obj/vec/is/sf/interface/sf.o
CC arch-linux-c-real/obj/vec/is/sf/interface/sftype.o
CC arch-linux-c-real/obj/vec/is/sf/interface/vscat.o
CC arch-linux-c-real/obj/vec/is/sf/utils/sfutils.o
CC arch-linux-c-real/obj/vec/is/section/interface/section.o
CC arch-linux-c-real/obj/vec/is/section/interface/sectionhdf5.o
CC arch-linux-c-real/obj/vec/is/is/impls/general/general.o
CC arch-linux-c-real/obj/vec/is/is/impls/stride/stride.o
CC arch-linux-c-real/obj/vec/is/is/impls/block/block.o
CC arch-linux-c-real/obj/vec/is/is/interface/index.o
CC arch-linux-c-real/obj/vec/is/is/interface/isregall.o
CC arch-linux-c-real/obj/vec/is/is/interface/isreg.o
CC arch-linux-c-real/obj/vec/is/is/utils/iscomp.o
CC arch-linux-c-real/obj/vec/is/is/utils/iscoloring.o
CC arch-linux-c-real/obj/vec/is/is/utils/isdiff.o
CC arch-linux-c-real/obj/vec/is/is/utils/isblock.o
CC arch-linux-c-real/obj/vec/is/utils/hdf5io.o
CC arch-linux-c-real/obj/vec/is/utils/isio.o
CC arch-linux-c-real/obj/vec/is/utils/isltog.o
CC arch-linux-c-real/obj/vec/is/utils/pmap.o
CC arch-linux-c-real/obj/vec/is/utils/psort.o
CC arch-linux-c-real/obj/mat/impls/normal/normm.o
CC arch-linux-c-real/obj/mat/impls/normal/normmh.o
CC arch-linux-c-real/obj/mat/impls/maij/maij.o
CC arch-linux-c-real/obj/mat/impls/composite/mcomposite.o
CC arch-linux-c-real/obj/mat/impls/dummy/matdummy.o
CC arch-linux-c-real/obj/mat/impls/blockmat/seq/blockmat.o
CC arch-linux-c-real/obj/mat/impls/nest/matnest.o
CC arch-linux-c-real/obj/mat/impls/python/pythonmat.o
CC arch-linux-c-real/obj/mat/impls/adj/mpi/mpiadj.o
CC arch-linux-c-real/obj/mat/impls/centering/centering.o
CC arch-linux-c-real/obj/mat/impls/lrc/lrc.o
CC arch-linux-c-real/obj/mat/impls/is/matis.o
CC arch-linux-c-real/obj/mat/impls/scatter/mscatter.o
CC arch-linux-c-real/obj/mat/impls/mffd/mffd.o
CC arch-linux-c-real/obj/mat/impls/mffd/mffddef.o
CC arch-linux-c-real/obj/mat/impls/mffd/mfregis.o
CC arch-linux-c-real/obj/mat/impls/mffd/wp.o
CC arch-linux-c-real/obj/vec/is/sf/impls/basic/sfpack.o
CC arch-linux-c-real/obj/mat/impls/dense/mpi/mmdense.o
CC arch-linux-c-real/obj/mat/impls/dense/mpi/mpidense.o
CC arch-linux-c-real/obj/mat/impls/dense/seq/densehdf5.o
CC arch-linux-c-real/obj/mat/impls/transpose/transm.o
CC arch-linux-c-real/obj/mat/impls/transpose/htransm.o
CC arch-linux-c-real/obj/mat/impls/dense/seq/dense.o
CC arch-linux-c-real/obj/mat/impls/shell/shell.o
CC arch-linux-c-real/obj/mat/impls/shell/shellcnv.o
CC arch-linux-c-real/obj/mat/impls/submat/submat.o
CC arch-linux-c-real/obj/mat/impls/sbaij/mpi/mmsbaij.o
CC arch-linux-c-real/obj/mat/impls/sbaij/mpi/sbaijov.o
CC arch-linux-c-real/obj/mat/impls/sbaij/mpi/mpiaijsbaij.o
CC arch-linux-c-real/obj/mat/impls/sbaij/mpi/mpisbaij.o
CC arch-linux-c-real/obj/mat/impls/sbaij/seq/sbaij.o
CC arch-linux-c-real/obj/mat/impls/sbaij/seq/sbaij2.o
CC arch-linux-c-real/obj/mat/impls/sbaij/seq/sbaijfact.o
CC arch-linux-c-real/obj/mat/impls/sbaij/seq/sro.o
CC arch-linux-c-real/obj/mat/impls/sbaij/seq/sbaijfact3.o
CC arch-linux-c-real/obj/mat/impls/sbaij/seq/sbaijfact4.o
CC arch-linux-c-real/obj/mat/impls/sbaij/seq/sbaijfact5.o
CC arch-linux-c-real/obj/mat/impls/sbaij/seq/sbaijfact2.o
CC arch-linux-c-real/obj/mat/impls/sbaij/seq/sbaijfact6.o
CC arch-linux-c-real/obj/mat/impls/sbaij/seq/sbaijfact7.o
CC arch-linux-c-real/obj/mat/impls/sbaij/seq/sbaijfact8.o
CC arch-linux-c-real/obj/mat/impls/sbaij/seq/sbaijfact9.o
CC arch-linux-c-real/obj/mat/impls/sbaij/seq/sbaijfact10.o
CC arch-linux-c-real/obj/mat/impls/sbaij/seq/sbaijfact11.o
CC arch-linux-c-real/obj/mat/impls/sbaij/seq/sbaijfact12.o
CC arch-linux-c-real/obj/mat/impls/fft/fft.o
CC arch-linux-c-real/obj/mat/impls/sbaij/seq/aijsbaij.o
CC arch-linux-c-real/obj/mat/impls/sell/mpi/mmsell.o
CC arch-linux-c-real/obj/mat/impls/sell/mpi/mpisell.o
CC arch-linux-c-real/obj/mat/impls/sell/seq/fdsell.o
CC arch-linux-c-real/obj/mat/impls/localref/mlocalref.o
CC arch-linux-c-real/obj/mat/impls/sell/seq/sell.o
CC arch-linux-c-real/obj/mat/impls/cdiagonal/cdiagonal.o
CC arch-linux-c-real/obj/mat/impls/aij/mpi/mmaij.o
CC arch-linux-c-real/obj/mat/impls/aij/mpi/mpiaijpc.o
CC arch-linux-c-real/obj/mat/impls/aij/mpi/mpiov.o
CC arch-linux-c-real/obj/mat/impls/aij/mpi/fdmpiaij.o
CC arch-linux-c-real/obj/mat/impls/aij/mpi/mpiaij.o
CC arch-linux-c-real/obj/mat/impls/aij/mpi/mpiptap.o
CC arch-linux-c-real/obj/mat/impls/aij/mpi/mpb_aij.o
CC arch-linux-c-real/obj/mat/impls/aij/mpi/mpimatmatmatmult.o
CC arch-linux-c-real/obj/mat/impls/aij/mpi/mpimattransposematmult.o
CC arch-linux-c-real/obj/mat/impls/aij/mpi/mpimatmatmult.o
CC arch-linux-c-real/obj/mat/impls/aij/mpi/aijperm/mpiaijperm.o
CC arch-linux-c-real/obj/mat/impls/aij/mpi/aijsell/mpiaijsell.o
CC arch-linux-c-real/obj/mat/impls/aij/mpi/crl/mcrl.o
CC arch-linux-c-real/obj/mat/impls/aij/seq/aijfact.o
CC arch-linux-c-real/obj/mat/impls/aij/seq/ij.o
CC arch-linux-c-real/obj/mat/impls/aij/seq/aij.o
CC arch-linux-c-real/obj/mat/impls/aij/seq/fdaij.o
CC arch-linux-c-real/obj/mat/impls/aij/seq/symtranspose.o
CC arch-linux-c-real/obj/mat/impls/aij/seq/matptap.o
CC arch-linux-c-real/obj/mat/impls/aij/seq/matrart.o
CC arch-linux-c-real/obj/mat/impls/aij/seq/matmatmult.o
CC arch-linux-c-real/obj/mat/impls/aij/seq/inode2.o
CC arch-linux-c-real/obj/mat/impls/aij/seq/matmatmatmult.o
CC arch-linux-c-real/obj/mat/impls/aij/seq/mattransposematmult.o
CC arch-linux-c-real/obj/mat/impls/aij/seq/aijhdf5.o
CC arch-linux-c-real/obj/mat/impls/aij/seq/crl/crl.o
CC arch-linux-c-real/obj/mat/impls/aij/seq/aijsell/aijsell.o
CC arch-linux-c-real/obj/mat/impls/aij/seq/bas/basfactor.o
CC arch-linux-c-real/obj/mat/impls/aij/seq/bas/spbas.o
CC arch-linux-c-real/obj/mat/impls/aij/seq/aijperm/aijperm.o
CC arch-linux-c-real/obj/mat/impls/aij/seq/inode.o
CC arch-linux-c-real/obj/mat/impls/baij/mpi/mmbaij.o
CC arch-linux-c-real/obj/mat/impls/baij/mpi/baijov.o
CC arch-linux-c-real/obj/mat/impls/baij/mpi/mpb_baij.o
CC arch-linux-c-real/obj/mat/impls/baij/mpi/mpiaijbaij.o
CC arch-linux-c-real/obj/mat/impls/baij/mpi/mpibaij.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baij2.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baij.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijfact.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijfact2.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/dgefa.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/dgedi.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/dgefa3.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/dgefa4.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/dgefa5.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/dgefa6.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/dgefa2.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/dgefa7.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/aijbaij.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijfact3.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijfact4.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijfact7.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijfact5.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijfact9.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijfact11.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijfact81.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijfact13.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolvtrannat1.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolvtrannat2.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolvtrannat3.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolv.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolvtrannat4.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolvtrannat5.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolvtrannat6.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolvtrannat7.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolvtran1.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolvtran2.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolvtran3.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolvtran4.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolvtran5.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolvtran6.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolvtran7.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolvtrann.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolvnat1.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolvnat2.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolvnat3.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolvnat4.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolvnat5.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolvnat6.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolvnat7.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolvnat11.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolvnat14.o
CC arch-linux-c-real/obj/mat/impls/baij/seq/baijsolvnat15.o
CC arch-linux-c-real/obj/mat/impls/preallocator/matpreallocator.o
CC arch-linux-c-real/obj/mat/matfd/fdmatrix.o
CC arch-linux-c-real/obj/mat/coarsen/coarsen.o
CC arch-linux-c-real/obj/mat/coarsen/scoarsen.o
CC arch-linux-c-real/obj/mat/impls/kaij/kaij.o
CC arch-linux-c-real/obj/mat/coarsen/impls/mis/mis.o
CC arch-linux-c-real/obj/mat/color/interface/matcoloring.o
CC arch-linux-c-real/obj/mat/color/interface/matcoloringregi.o
CC arch-linux-c-real/obj/mat/color/utils/bipartite.o
CC arch-linux-c-real/obj/mat/coarsen/impls/hem/hem.o
CC arch-linux-c-real/obj/mat/color/utils/valid.o
CC arch-linux-c-real/obj/mat/color/utils/weights.o
CC arch-linux-c-real/obj/mat/color/impls/minpack/degr.o
CC arch-linux-c-real/obj/mat/color/impls/minpack/color.o
CC arch-linux-c-real/obj/mat/color/impls/minpack/dsm.o
CC arch-linux-c-real/obj/mat/color/impls/minpack/ido.o
CC arch-linux-c-real/obj/mat/color/impls/minpack/numsrt.o
CC arch-linux-c-real/obj/mat/color/impls/minpack/seq.o
CC arch-linux-c-real/obj/mat/color/impls/minpack/setr.o
CC arch-linux-c-real/obj/mat/color/impls/minpack/slo.o
CC arch-linux-c-real/obj/mat/color/impls/natural/natural.o
CC arch-linux-c-real/obj/mat/color/impls/power/power.o
CC arch-linux-c-real/obj/mat/color/impls/greedy/greedy.o
CC arch-linux-c-real/obj/mat/color/impls/jp/jp.o
CC arch-linux-c-real/obj/mat/partition/partition.o
CC arch-linux-c-real/obj/mat/partition/spartition.o
CC arch-linux-c-real/obj/mat/order/sp1wd.o
CC arch-linux-c-real/obj/mat/order/spnd.o
CC arch-linux-c-real/obj/mat/order/spqmd.o
CC arch-linux-c-real/obj/mat/partition/impls/hierarchical/hierarchical.o
CC arch-linux-c-real/obj/mat/order/sprcm.o
CC arch-linux-c-real/obj/mat/order/sorder.o
CC arch-linux-c-real/obj/mat/order/spectral.o
CC arch-linux-c-real/obj/mat/order/sregis.o
CC arch-linux-c-real/obj/mat/order/degree.o
CC arch-linux-c-real/obj/mat/order/fnroot.o
CC arch-linux-c-real/obj/mat/order/genqmd.o
CC arch-linux-c-real/obj/mat/order/qmdqt.o
CC arch-linux-c-real/obj/mat/order/rcm.o
CC arch-linux-c-real/obj/mat/order/fn1wd.o
CC arch-linux-c-real/obj/mat/order/gen1wd.o
CC arch-linux-c-real/obj/mat/order/genrcm.o
CC arch-linux-c-real/obj/mat/order/qmdrch.o
CC arch-linux-c-real/obj/mat/order/rootls.o
CC arch-linux-c-real/obj/mat/order/fndsep.o
CC arch-linux-c-real/obj/mat/order/gennd.o
CC arch-linux-c-real/obj/mat/order/qmdmrg.o
CC arch-linux-c-real/obj/mat/order/qmdupd.o
CC arch-linux-c-real/obj/mat/order/wbm.o
CC arch-linux-c-real/obj/mat/interface/matreg.o
CC arch-linux-c-real/obj/mat/interface/matregis.o
CC arch-linux-c-real/obj/mat/interface/matnull.o
CC arch-linux-c-real/obj/mat/interface/dlregismat.o
CC arch-linux-c-real/obj/mat/interface/matproduct.o
CC arch-linux-c-real/obj/mat/utils/convert.o
CC arch-linux-c-real/obj/mat/utils/matstash.o
CC arch-linux-c-real/obj/mat/utils/axpy.o
CC arch-linux-c-real/obj/mat/utils/zerodiag.o
CC arch-linux-c-real/obj/mat/interface/matrix.o
CC arch-linux-c-real/obj/mat/utils/factorschur.o
CC arch-linux-c-real/obj/mat/utils/matio.o
CC arch-linux-c-real/obj/mat/utils/getcolv.o
CC arch-linux-c-real/obj/mat/utils/freespace.o
CC arch-linux-c-real/obj/mat/utils/compressedrow.o
CC arch-linux-c-real/obj/mat/utils/gcreate.o
CC arch-linux-c-real/obj/mat/utils/matstashspace.o
CC arch-linux-c-real/obj/mat/utils/pheap.o
CC arch-linux-c-real/obj/mat/utils/multequal.o
CC arch-linux-c-real/obj/mat/utils/bandwidth.o
CC arch-linux-c-real/obj/mat/utils/overlapsplit.o
CC arch-linux-c-real/obj/mat/utils/zerorows.o
CC arch-linux-c-real/obj/dm/impls/network/networkcreate.o
CC arch-linux-c-real/obj/dm/impls/network/networkmonitor.o
CC arch-linux-c-real/obj/dm/impls/da/da2.o
CC arch-linux-c-real/obj/dm/impls/da/da1.o
CC arch-linux-c-real/obj/dm/impls/network/network.o
CC arch-linux-c-real/obj/dm/impls/da/daghost.o
CC arch-linux-c-real/obj/dm/impls/da/dacorn.o
CC arch-linux-c-real/obj/dm/impls/da/dagtol.o
CC arch-linux-c-real/obj/dm/impls/da/daltol.o
CC arch-linux-c-real/obj/dm/impls/da/daindex.o
CC arch-linux-c-real/obj/dm/impls/da/da3.o
CC arch-linux-c-real/obj/dm/impls/da/dascatter.o
CC arch-linux-c-real/obj/dm/impls/da/dadestroy.o
CC arch-linux-c-real/obj/dm/impls/da/dacreate.o
CC arch-linux-c-real/obj/dm/impls/da/dadist.o
CC arch-linux-c-real/obj/dm/impls/da/dalocal.o
CC arch-linux-c-real/obj/dm/impls/da/daview.o
CC arch-linux-c-real/obj/dm/impls/da/dasub.o
CC arch-linux-c-real/obj/dm/impls/da/gr1.o
CC arch-linux-c-real/obj/dm/impls/da/dagtona.o
CC arch-linux-c-real/obj/dm/impls/da/gr2.o
CC arch-linux-c-real/obj/dm/impls/da/dapf.o
CC arch-linux-c-real/obj/dm/impls/da/dagetarray.o
CC arch-linux-c-real/obj/dm/impls/da/dainterp.o
CC arch-linux-c-real/obj/dm/impls/da/dagetelem.o
CC arch-linux-c-real/obj/dm/impls/da/dareg.o
CC arch-linux-c-real/obj/dm/impls/da/da.o
CC arch-linux-c-real/obj/dm/impls/da/grvtk.o
CC arch-linux-c-real/obj/dm/impls/da/dageometry.o
CC arch-linux-c-real/obj/dm/impls/da/dadd.o
CC arch-linux-c-real/obj/dm/impls/da/dapreallocate.o
CC arch-linux-c-real/obj/dm/impls/da/fdda.o
CC arch-linux-c-real/obj/dm/impls/da/grglvis.o
CC arch-linux-c-real/obj/dm/impls/composite/packm.o
CC arch-linux-c-real/obj/dm/impls/composite/pack.o
CC arch-linux-c-real/obj/dm/impls/forest/forest.o
CC arch-linux-c-real/obj/dm/impls/redundant/dmredundant.o
CC arch-linux-c-real/obj/dm/impls/stag/stag.o
CC arch-linux-c-real/obj/dm/impls/stag/stag1d.o
CC arch-linux-c-real/obj/dm/impls/stag/stag2d.o
CC arch-linux-c-real/obj/dm/impls/stag/stagda.o
CC arch-linux-c-real/obj/dm/impls/stag/stagintern.o
CC arch-linux-c-real/obj/dm/impls/stag/stagstencil.o
CC arch-linux-c-real/obj/dm/impls/stag/stagutils.o
CC arch-linux-c-real/obj/dm/impls/stag/stag3d.o
CC arch-linux-c-real/obj/dm/impls/plex/plexcreate.o
CC arch-linux-c-real/obj/dm/impls/plex/plexpartition.o
CC arch-linux-c-real/obj/dm/impls/plex/plexdistribute.o
CC arch-linux-c-real/obj/dm/impls/plex/plexrefine.o
CC arch-linux-c-real/obj/dm/impls/plex/plexadapt.o
CC arch-linux-c-real/obj/dm/impls/plex/plexcoarsen.o
CC arch-linux-c-real/obj/dm/impls/plex/plex.o
CC arch-linux-c-real/obj/dm/impls/plex/plexpreallocate.o
CC arch-linux-c-real/obj/dm/impls/plex/plexreorder.o
CC arch-linux-c-real/obj/dm/impls/plex/plexinterpolate.o
CC arch-linux-c-real/obj/dm/impls/plex/plexgeometry.o
CC arch-linux-c-real/obj/dm/impls/plex/plexhdf5.o
CC arch-linux-c-real/obj/dm/impls/plex/plexhdf5xdmf.o
CC arch-linux-c-real/obj/dm/impls/plex/plexexodusii.o
CC arch-linux-c-real/obj/dm/impls/plex/plexsubmesh.o
CC arch-linux-c-real/obj/dm/impls/plex/plexfluent.o
CC arch-linux-c-real/obj/dm/impls/plex/plexcgns.o
CC arch-linux-c-real/obj/dm/impls/plex/plexmed.o
CC arch-linux-c-real/obj/dm/impls/plex/plexply.o
CC arch-linux-c-real/obj/dm/impls/plex/plexvtk.o
CC arch-linux-c-real/obj/dm/impls/plex/plexpoint.o
CC arch-linux-c-real/obj/dm/impls/plex/plexgmsh.o
CC arch-linux-c-real/obj/dm/impls/plex/plexvtu.o
CC arch-linux-c-real/obj/dm/impls/plex/plexfvm.o
CC arch-linux-c-real/obj/dm/impls/plex/plexindices.o
CC arch-linux-c-real/obj/dm/impls/plex/plextree.o
CC arch-linux-c-real/obj/dm/impls/plex/plexgenerate.o
CC arch-linux-c-real/obj/dm/impls/plex/plexfem.o
CC arch-linux-c-real/obj/dm/impls/plex/plexnatural.o
CC arch-linux-c-real/obj/dm/impls/plex/plexorient.o
CC arch-linux-c-real/obj/dm/impls/plex/plexproject.o
CC arch-linux-c-real/obj/dm/impls/plex/glexg.o
CC arch-linux-c-real/obj/dm/impls/plex/plexcheckinterface.o
CC arch-linux-c-real/obj/dm/impls/plex/plexglvis.o
CC arch-linux-c-real/obj/dm/impls/plex/plexhpddm.o
CC arch-linux-c-real/obj/dm/impls/plex/plexegads.o
CC arch-linux-c-real/obj/dm/impls/plex/plexsection.o
CC arch-linux-c-real/obj/dm/impls/plex/plexegadslite.o
CC arch-linux-c-real/obj/dm/impls/plex/plexceed.o
CC arch-linux-c-real/obj/dm/impls/plex/plexmetric.o
CC arch-linux-c-real/obj/dm/impls/plex/transform/impls/refine/sbr/plexrefsbr.o
CC arch-linux-c-real/obj/dm/impls/plex/transform/impls/refine/alfeld/plexrefalfeld.o
CC arch-linux-c-real/obj/dm/impls/plex/transform/interface/plextransform.o
CC arch-linux-c-real/obj/dm/impls/plex/transform/impls/refine/tobox/plexreftobox.o
CC arch-linux-c-real/obj/dm/impls/plex/transform/impls/refine/regular/plexrefregular.o
CC arch-linux-c-real/obj/dm/impls/plex/transform/impls/filter/plextrfilter.o
CC arch-linux-c-real/obj/dm/impls/plex/transform/impls/refine/bl/plexrefbl.o
CC arch-linux-c-real/obj/dm/impls/product/product.o
CC arch-linux-c-real/obj/dm/impls/product/productutils.o
CC arch-linux-c-real/obj/dm/impls/patch/patchcreate.o
CC arch-linux-c-real/obj/dm/impls/patch/patch.o
CC arch-linux-c-real/obj/dm/impls/swarm/data_bucket.o
CC arch-linux-c-real/obj/dm/impls/swarm/swarm.o
CC arch-linux-c-real/obj/dm/impls/swarm/data_ex.o
CC arch-linux-c-real/obj/dm/impls/swarm/swarm_migrate.o
CC arch-linux-c-real/obj/dm/impls/swarm/swarmpic.o
CC arch-linux-c-real/obj/dm/impls/swarm/swarmpic_da.o
CC arch-linux-c-real/obj/dm/impls/swarm/swarmpic_plex.o
CC arch-linux-c-real/obj/dm/impls/swarm/swarmpic_view.o
CC arch-linux-c-real/obj/dm/impls/swarm/swarmpic_sort.o
CC arch-linux-c-real/obj/dm/impls/shell/dmshell.o
CC arch-linux-c-real/obj/dm/impls/sliced/sliced.o
CC arch-linux-c-real/obj/dm/field/interface/dmfieldregi.o
CC arch-linux-c-real/obj/dm/field/interface/dmfield.o
CC arch-linux-c-real/obj/dm/field/interface/dlregisdmfield.o
CC arch-linux-c-real/obj/dm/field/impls/shell/dmfieldshell.o
CC arch-linux-c-real/obj/dm/field/impls/da/dmfieldda.o
CC arch-linux-c-real/obj/dm/partitioner/interface/partitioner.o
CC arch-linux-c-real/obj/dm/field/impls/ds/dmfieldds.o
CC arch-linux-c-real/obj/dm/partitioner/interface/partitionerreg.o
CC arch-linux-c-real/obj/dm/partitioner/impls/ptscotch/partptscotch.o
CC arch-linux-c-real/obj/dm/partitioner/impls/gather/partgather.o
CC arch-linux-c-real/obj/dm/partitioner/impls/parmetis/partparmetis.o
CC arch-linux-c-real/obj/dm/partitioner/impls/simple/partsimple.o
CC arch-linux-c-real/obj/dm/partitioner/impls/matpart/partmatpart.o
CC arch-linux-c-real/obj/dm/partitioner/impls/chaco/partchaco.o
CC arch-linux-c-real/obj/dm/partitioner/impls/shell/partshell.o
CC arch-linux-c-real/obj/dm/dt/space/interface/space.o
CC arch-linux-c-real/obj/dm/dt/space/impls/sum/spacesum.o
CC arch-linux-c-real/obj/dm/dt/space/impls/subspace/spacesubspace.o
CC arch-linux-c-real/obj/dm/label/dmlabel.o
CC arch-linux-c-real/obj/dm/dt/space/impls/point/spacepoint.o
CC arch-linux-c-real/obj/dm/dt/space/impls/tensor/spacetensor.o
CC arch-linux-c-real/obj/dm/dt/space/impls/poly/spacepoly.o
CC arch-linux-c-real/obj/dm/dt/fv/interface/fv.o
CC arch-linux-c-real/obj/dm/dt/dualspace/impls/refined/dualspacerefined.o
CC arch-linux-c-real/obj/dm/dt/dualspace/interface/dualspace.o
CC arch-linux-c-real/obj/dm/dt/dualspace/impls/simple/dspacesimple.o
CC arch-linux-c-real/obj/dm/dt/fe/interface/fe.o
CC arch-linux-c-real/obj/dm/dt/fe/interface/fegeom.o
CC arch-linux-c-real/obj/dm/dt/fe/interface/feceed.o
CC arch-linux-c-real/obj/dm/dt/dualspace/impls/lagrange/dspacelagrange.o
CC arch-linux-c-real/obj/dm/dt/fe/impls/composite/fecomposite.o
CC arch-linux-c-real/obj/dm/dt/fe/impls/basic/febasic.o
CC arch-linux-c-real/obj/dm/dt/interface/dt.o
CC arch-linux-c-real/obj/dm/dt/interface/dtds.o
CC arch-linux-c-real/obj/dm/dt/interface/dtaltv.o
CC arch-linux-c-real/obj/dm/dt/interface/dtweakform.o
CC arch-linux-c-real/obj/dm/interface/dmregall.o
CC arch-linux-c-real/obj/dm/interface/dmget.o
CC arch-linux-c-real/obj/dm/interface/dmi.o
CC arch-linux-c-real/obj/dm/interface/dmglvis.o
CC arch-linux-c-real/obj/dm/interface/dlregisdmdm.o
CC arch-linux-c-real/obj/dm/interface/dmceed.o
CC arch-linux-c-real/obj/ksp/pc/interface/precon.o
CC arch-linux-c-real/obj/ksp/pc/interface/pcset.o
CC arch-linux-c-real/obj/ksp/pc/interface/pcregis.o
CC arch-linux-c-real/obj/dm/interface/dm.o
CC arch-linux-c-real/obj/ksp/pc/impls/mg/fmg.o
CC arch-linux-c-real/obj/ksp/pc/impls/mg/smg.o
CC arch-linux-c-real/obj/ksp/pc/impls/mg/mg.o
CC arch-linux-c-real/obj/ksp/pc/impls/mg/mgfunc.o
CC arch-linux-c-real/obj/ksp/pc/impls/lsc/lsc.o
CC arch-linux-c-real/obj/ksp/pc/impls/mg/mgadapt.o
CC arch-linux-c-real/obj/ksp/pc/impls/vpbjacobi/vpbjacobi.o
CC arch-linux-c-real/obj/ksp/pc/impls/composite/composite.o
CC arch-linux-c-real/obj/ksp/pc/impls/deflation/deflation.o
CC arch-linux-c-real/obj/ksp/pc/impls/deflation/deflationspace.o
CC arch-linux-c-real/obj/ksp/pc/impls/gasm/gasm.o
CC arch-linux-c-real/obj/ksp/pc/impls/sor/sor.o
CC arch-linux-c-real/obj/ksp/pc/impls/svd/svd.o
CC arch-linux-c-real/obj/ksp/pc/impls/telescope/telescope.o
CC arch-linux-c-real/obj/ksp/pc/impls/telescope/telescope_dmda.o
CC arch-linux-c-real/obj/ksp/pc/impls/telescope/telescope_coarsedm.o
CC arch-linux-c-real/obj/ksp/pc/impls/ksp/pcksp.o
CC arch-linux-c-real/obj/ksp/pc/impls/python/pythonpc.o
CC arch-linux-c-real/obj/ksp/pc/impls/patch/pcpatch.o
CC arch-linux-c-real/obj/ksp/pc/impls/lmvm/lmvmpc.o
CC arch-linux-c-real/obj/ksp/pc/impls/factor/factor.o
CC arch-linux-c-real/obj/ksp/pc/impls/factor/factimpl.o
CC arch-linux-c-real/obj/ksp/pc/impls/factor/lu/lu.o
CC arch-linux-c-real/obj/ksp/pc/impls/factor/ilu/ilu.o
CC arch-linux-c-real/obj/ksp/pc/impls/factor/qr/qr.o
CC arch-linux-c-real/obj/ksp/pc/impls/factor/icc/icc.o
CC arch-linux-c-real/obj/ksp/pc/impls/factor/cholesky/cholesky.o
CC arch-linux-c-real/obj/ksp/pc/impls/tfs/bitmask.o
CC arch-linux-c-real/obj/ksp/pc/impls/tfs/comm.o
CC arch-linux-c-real/obj/ksp/pc/impls/tfs/gs.o
CC arch-linux-c-real/obj/ksp/pc/impls/tfs/ivec.o
CC arch-linux-c-real/obj/ksp/pc/impls/tfs/xyt.o
CC arch-linux-c-real/obj/ksp/pc/impls/tfs/xxt.o
CC arch-linux-c-real/obj/ksp/pc/impls/tfs/tfs.o
CC arch-linux-c-real/obj/ksp/pc/impls/gamg/gamg.o
CC arch-linux-c-real/obj/ksp/pc/impls/gamg/agg.o
CC arch-linux-c-real/obj/ksp/pc/impls/gamg/geo.o
CC arch-linux-c-real/obj/ksp/pc/impls/gamg/util.o
CC arch-linux-c-real/obj/ksp/pc/impls/pbjacobi/pbjacobi.o
CC arch-linux-c-real/obj/ksp/pc/impls/galerkin/galerkin.o
CC arch-linux-c-real/obj/ksp/pc/impls/gamg/classical.o
CC arch-linux-c-real/obj/ksp/pc/impls/is/nn/nn.o
CC arch-linux-c-real/obj/ksp/pc/impls/is/pcis.o
CC arch-linux-c-real/obj/ksp/pc/impls/bddc/bddc.o
CC arch-linux-c-real/obj/ksp/pc/impls/bddc/bddcgraph.o
CC arch-linux-c-real/obj/ksp/pc/impls/bddc/bddcscalingbasic.o
CC arch-linux-c-real/obj/ksp/pc/impls/bddc/bddcnullspace.o
CC arch-linux-c-real/obj/ksp/pc/impls/bddc/bddcfetidp.o
CC arch-linux-c-real/obj/ksp/pc/impls/bddc/bddcschurs.o
CC arch-linux-c-real/obj/ksp/pc/impls/cp/cp.o
CC arch-linux-c-real/obj/ksp/pc/impls/mat/pcmat.o
CC arch-linux-c-real/obj/ksp/pc/impls/none/none.o
CC arch-linux-c-real/obj/ksp/pc/impls/bddc/bddcprivate.o
CC arch-linux-c-real/obj/ksp/pc/impls/asm/asm.o
CC arch-linux-c-real/obj/ksp/pc/impls/hmg/hmg.o
CC arch-linux-c-real/obj/ksp/pc/impls/bjacobi/bjacobi.o
CC arch-linux-c-real/obj/ksp/pc/impls/shell/shellpc.o
CC arch-linux-c-real/obj/ksp/pc/impls/kaczmarz/kaczmarz.o
CC arch-linux-c-real/obj/ksp/pc/impls/redundant/redundant.o
CC arch-linux-c-real/obj/ksp/pc/impls/wb/wb.o
CC arch-linux-c-real/obj/ksp/pc/impls/redistribute/redistribute.o
CC arch-linux-c-real/obj/ksp/pc/impls/eisens/eisen.o
CC arch-linux-c-real/obj/ksp/pc/impls/jacobi/jacobi.o
CC arch-linux-c-real/obj/ksp/pc/impls/fieldsplit/fieldsplit.o
CC arch-linux-c-real/obj/ksp/ksp/impls/fetidp/fetidp.o
CC arch-linux-c-real/obj/ksp/ksp/impls/lcd/lcd.o
CC arch-linux-c-real/obj/ksp/ksp/impls/bcgsl/bcgsl.o
CC arch-linux-c-real/obj/ksp/ksp/impls/gmres/borthog.o
CC arch-linux-c-real/obj/ksp/ksp/impls/gmres/gmres.o
CC arch-linux-c-real/obj/ksp/ksp/impls/gmres/borthog2.o
CC arch-linux-c-real/obj/ksp/ksp/impls/gmres/gmres2.o
CC arch-linux-c-real/obj/ksp/ksp/impls/gmres/gmpre.o
CC arch-linux-c-real/obj/ksp/ksp/impls/gmres/gmreig.o
CC arch-linux-c-real/obj/ksp/ksp/impls/gmres/pgmres/pgmres.o
CC arch-linux-c-real/obj/ksp/ksp/impls/gmres/fgmres/modpcf.o
CC arch-linux-c-real/obj/ksp/ksp/
Hi everyone,
I have the same problem but when following the solution above, i still have the problem.
Thanks in advance, SonicxPrime
Hm. OK, I've reproduced this error on my Ubuntu 20 VM. I will follow up with the PETSc support list and reply when I have an answer.
Dear Hetzer,
Thank you for your help.
SonicxPrime
OK, I've traced the error to a change in the SLEPc package between versions 3.13 and 3.14. I've added the ability to specify the PETSc version as well as the SLEPc version in the configure script, as a stopgap until I can work with the developers to find the issue and hopefully get it fixed. The new configure command is in the README and the manual. To fix your existing downloads, you should be able to:
... cd ${NCPAPROP_DIR} git pull rm -rf extern ./configure --with-localpetsc local_petsc_version=3.13.4 local_slepc_version=3.13.4 make ...
This will download and install versions of PETSc and SLEPc that I have verified do not cause this issue.
Please let me know whether this fixes your problem or not, so I can close this issue.
Dear Hetzer,
Thank you for your help. It's working now.
Best regards, Tahina
Dear Hetzer,
Following your solution, the problem has been fixed and the software is working properly now.
Thank you for your help.
Best regards, Zhang
Hello
First of all, thank you for sharing your code. I have met a problem in running the first sample of Modess:
I installed PETSc by
Could you please offer me some help?
============================================================
By the way, I found some tiny mistakes in the manual:
Manual still gives the previous link of the git on page 5, section 2.2.1
Spelling mistakes in command argument "--dispersion_file" of the first example of ModBB on page 30
Thanks,
Zhang