Open baozg opened 2 years ago
Hi,
I installed MoltenVK and Vulkan on M1 Mac and gfaestus cargo building seems very smooth. But when I run the gfaestus with my graph, it display was all black and some weired thing displayed in the screen. I can choose the button.
gfaestus
./gfaestus-release chr1.fasta.gz.0eed25d.c2fac19.5c75112.smooth.final.gfa
chr1.fasta.gz.0eed25d.c2fac19.5c75112.smooth.final.og.lay.tsv DEBUG [gfaestus] Logger initalized DEBUG [gfaestus] using /Users/zbao/software/gfaestus/chr1.fasta.gz.0eed25d.c2fac19.5c75112.smooth.final.gfa and /Users/zbao/software/gfaestus/chr1.fasta.gz.0eed25d.c2fac19.5c75112.smooth.final.og.lay.tsv DEBUG [gfaestus::vulkan] Initializing GfaestusVk context DEBUG [gfaestus::vulkan] Using default event loop DEBUG [gfaestus::vulkan] Creating window DEBUG [gfaestus::vulkan] Created Vulkan entry DEBUG [gfaestus::vulkan::init] Creating instance DEBUG [gfaestus::vulkan::init] Enumerated required instance extensions DEBUG [gfaestus::vulkan::init] getting layer names and pointers DEBUG [gfaestus::vulkan::init] Loading instance extension "VK_KHR_surface" DEBUG [gfaestus::vulkan::init] Loading instance extension "VK_EXT_metal_surface" DEBUG [gfaestus::vulkan::init] Loading instance extension "VK_KHR_get_physical_device_properties2" DEBUG [gfaestus::vulkan] Created Vulkan instance DEBUG [gfaestus::vulkan] Created window surface DEBUG [gfaestus::vulkan::init] Enumerating physical devices DEBUG [gfaestus::vulkan::init] Device 0 - "Apple M1 Pro" INFO [gfaestus::vulkan::init] Selected physical device: "Apple M1 Pro" DEBUG [gfaestus::vulkan::init] Found queue families; graphics: Some(0), present: Some(0), compute: Some(0) WARN [gfaestus::vulkan::context] Device is missing the optional feature: wide_lines DEBUG [gfaestus::vulkan::render_pass] Chose node ID image format: R32_UINT DEBUG [gfaestus::vulkan] Creating image ImageCreateInfo { s_type: IMAGE_CREATE_INFO, p_next: 0x0, flags: , image_type: TYPE_2D, format: B8G8R8A8_UNORM, extent: Extent3D { width: 800, height: 600, depth: 1 }, mip_levels: 1, array_layers: 1, samples: TYPE_4, tiling: OPTIMAL, usage: COLOR_ATTACHMENT | TRANSIENT_ATTACHMENT, sharing_mode: EXCLUSIVE, queue_family_index_count: 0, p_queue_family_indices: 0x0, initial_layout: UNDEFINED } DEBUG [gfaestus::vulkan] Allocating 1920000 bytes of memory for image DEBUG [gfaestus::vulkan] Image created: 0x135645a90 DEBUG [gfaestus::vulkan] Creating image ImageCreateInfo { s_type: IMAGE_CREATE_INFO, p_next: 0x0, flags: , image_type: TYPE_2D, format: B8G8R8A8_UNORM, extent: Extent3D { width: 800, height: 600, depth: 1 }, mip_levels: 1, array_layers: 1, samples: TYPE_1, tiling: OPTIMAL, usage: COLOR_ATTACHMENT, sharing_mode: EXCLUSIVE, queue_family_index_count: 0, p_queue_family_indices: 0x0, initial_layout: UNDEFINED } DEBUG [gfaestus::vulkan] Allocating 1920000 bytes of memory for image DEBUG [gfaestus::vulkan] Image created: 0x136804080 DEBUG [gfaestus::vulkan] Creating image ImageCreateInfo { s_type: IMAGE_CREATE_INFO, p_next: 0x0, flags: , image_type: TYPE_2D, format: R32_UINT, extent: Extent3D { width: 800, height: 600, depth: 1 }, mip_levels: 1, array_layers: 1, samples: TYPE_4, tiling: OPTIMAL, usage: COLOR_ATTACHMENT | TRANSIENT_ATTACHMENT, sharing_mode: EXCLUSIVE, queue_family_index_count: 0, p_queue_family_indices: 0x0, initial_layout: UNDEFINED } DEBUG [gfaestus::vulkan] Allocating 1920000 bytes of memory for image DEBUG [gfaestus::vulkan] Image created: 0x135647100 DEBUG [gfaestus::vulkan] Creating image ImageCreateInfo { s_type: IMAGE_CREATE_INFO, p_next: 0x0, flags: , image_type: TYPE_2D, format: R32_UINT, extent: Extent3D { width: 800, height: 600, depth: 1 }, mip_levels: 1, array_layers: 1, samples: TYPE_1, tiling: OPTIMAL, usage: TRANSFER_SRC | COLOR_ATTACHMENT, sharing_mode: EXCLUSIVE, queue_family_index_count: 0, p_queue_family_indices: 0x0, initial_layout: UNDEFINED } DEBUG [gfaestus::vulkan] Allocating 1920000 bytes of memory for image DEBUG [gfaestus::vulkan] Image created: 0x1356460b0 DEBUG [gfaestus::vulkan] Creating image ImageCreateInfo { s_type: IMAGE_CREATE_INFO, p_next: 0x0, flags: , image_type: TYPE_2D, format: R8G8B8A8_UNORM, extent: Extent3D { width: 800, height: 600, depth: 1 }, mip_levels: 1, array_layers: 1, samples: TYPE_4, tiling: OPTIMAL, usage: COLOR_ATTACHMENT | TRANSIENT_ATTACHMENT, sharing_mode: EXCLUSIVE, queue_family_index_count: 0, p_queue_family_indices: 0x0, initial_layout: UNDEFINED } DEBUG [gfaestus::vulkan] Allocating 1920000 bytes of memory for image DEBUG [gfaestus::vulkan] Image created: 0x136811600 DEBUG [gfaestus::vulkan] Creating image ImageCreateInfo { s_type: IMAGE_CREATE_INFO, p_next: 0x0, flags: , image_type: TYPE_2D, format: R8G8B8A8_UNORM, extent: Extent3D { width: 800, height: 600, depth: 1 }, mip_levels: 1, array_layers: 1, samples: TYPE_1, tiling: OPTIMAL, usage: SAMPLED | COLOR_ATTACHMENT, sharing_mode: EXCLUSIVE, queue_family_index_count: 0, p_queue_family_indices: 0x0, initial_layout: UNDEFINED } DEBUG [gfaestus::vulkan] Allocating 1920000 bytes of memory for image DEBUG [gfaestus::vulkan] Image created: 0x136b0c280 DEBUG [gfaestus::vulkan] Creating image ImageCreateInfo { s_type: IMAGE_CREATE_INFO, p_next: 0x0, flags: , image_type: TYPE_2D, format: R8G8B8A8_UNORM, extent: Extent3D { width: 800, height: 600, depth: 1 }, mip_levels: 1, array_layers: 1, samples: TYPE_1, tiling: OPTIMAL, usage: SAMPLED | COLOR_ATTACHMENT, sharing_mode: EXCLUSIVE, queue_family_index_count: 0, p_queue_family_indices: 0x0, initial_layout: UNDEFINED } DEBUG [gfaestus::vulkan] Allocating 1920000 bytes of memory for image DEBUG [gfaestus::vulkan] Image created: 0x13680a530 DEBUG [gfaestus] futures thread pool: 3 DEBUG [gfaestus] rayon thread pool: 4 INFO [gfaestus] Loading GFA INFO [gfaestus::gfa::load] loading GFA with 4289958 nodes, 5937559 edges INFO [gfaestus::gfa::load] adding nodes INFO [gfaestus::gfa::load] adding edges INFO [gfaestus::gfa::load] adding paths INFO [gfaestus::gfa::load] created path handles INFO [gfaestus::universe] loading layout INFO [gfaestus] layout bounding box (1000.00, 1000.00) (29598796.00, 516053.66) INFO [gfaestus] layout width: 29597796.00 height: 515053.66 INFO [gfaestus] GFA loaded in 24.537 sec INFO [gfaestus] Loaded 4289958 nodes 8579916 points WARN [gfaestus::vulkan::draw_system::nodes] node_renderer_type: TessellationQuads DEBUG [gfaestus::vulkan::texture] Creating image ImageCreateInfo { s_type: IMAGE_CREATE_INFO, p_next: 0x0, flags: , image_type: TYPE_2D, format: R8G8B8A8_UNORM, extent: Extent3D { width: 2048, height: 64, depth: 1 }, mip_levels: 1, array_layers: 1, samples: TYPE_1, tiling: OPTIMAL, usage: TRANSFER_SRC | TRANSFER_DST | SAMPLED | STORAGE, sharing_mode: EXCLUSIVE, queue_family_index_count: 0, p_queue_family_indices: 0x0, initial_layout: UNDEFINED } DEBUG [gfaestus::vulkan::texture] Allocating 524288 bytes of memory for image DEBUG [gfaestus::vulkan::texture] Transitioning image to SHADER_READ_ONLY_OPTIMAL DEBUG [gfaestus::vulkan::texture] Created image view DEBUG [gfaestus::vulkan::texture] Image created: 0x2d6b47a70 DEBUG [gfaestus::reactor] spawning reactor task DEBUG [gfaestus::reactor] spawning reactor task DEBUG [gfaestus::reactor] spawning reactor task DEBUG [gfaestus::reactor] spawning reactor task DEBUG [gfaestus::reactor] spawning reactor task DEBUG [gfaestus::script] Overlay values, min: 1, max: 4016 [src/main.rs:380] DEBUG [gfaestus::vulkan::texture] Creating image ImageCreateInfo { s_type: IMAGE_CREATE_INFO, p_next: 0x0, flags: , image_type: TYPE_2D, format: R8G8B8A8_UNORM, extent: Extent3D { width: 1024, height: 64, depth: 1 }, mip_levels: 1, array_layers: 1, samples: TYPE_1, tiling: OPTIMAL, usage: TRANSFER_SRC | TRANSFER_DST | SAMPLED | STORAGE, sharing_mode: EXCLUSIVE, queue_family_index_count: 0, p_queue_family_indices: 0x0, initial_layout: UNDEFINED } DEBUG [gfaestus::vulkan::texture] Allocating 262144 bytes of memory for image DEBUG [gfaestus::vulkan::texture] Transitioning image to SHADER_READ_ONLY_OPTIMAL DEBUG [gfaestus::vulkan::texture] Created image view DEBUG [gfaestus::vulkan::texture] Image created: 0x2c1ff8a20 DEBUG [gfaestus::vulkan::texture] Copying buffer into texture [src/main.rs:388] [src/main.rs:391] WARN [gfaestus::gui::console] initializing app_module WARN [gfaestus::gui::console] initializing msg_module WARN [gfaestus::gui::console] initializing db_module WARN [gfaestus::gui::console] initializing geo_module WARN [gfaestus::gui::console] initializing modal_module DEBUG [gfaestus::vulkan::texture] Creating 2048x64 R8_UNORM texture from pixel slice DEBUG [gfaestus::vulkan::texture] Created staging buffer DEBUG [gfaestus::vulkan::texture] Copied pixels into staging buffer DEBUG [gfaestus::vulkan::texture] Creating image ImageCreateInfo { s_type: IMAGE_CREATE_INFO, p_next: 0x0, flags: , image_type: TYPE_2D, format: R8_UNORM, extent: Extent3D { width: 2048, height: 64, depth: 1 }, mip_levels: 1, array_layers: 1, samples: TYPE_1, tiling: OPTIMAL, usage: TRANSFER_SRC | TRANSFER_DST | SAMPLED, sharing_mode: EXCLUSIVE, queue_family_index_count: 0, p_queue_family_indices: 0x0, initial_layout: UNDEFINED } DEBUG [gfaestus::vulkan::texture] Filled image from staging buffer WARN [gfaestus] uploaded path view texture: User(1) DEBUG [gfaestus::vulkan::render_pass] Chose node ID image format: R32_UINT DEBUG [gfaestus::vulkan] Creating image ImageCreateInfo { s_type: IMAGE_CREATE_INFO, p_next: 0x0, flags: , image_type: TYPE_2D, format: B8G8R8A8_UNORM, extent: Extent3D { width: 3024, height: 1890, depth: 1 }, mip_levels: 1, array_layers: 1, samples: TYPE_4, tiling: OPTIMAL, usage: COLOR_ATTACHMENT | TRANSIENT_ATTACHMENT, sharing_mode: EXCLUSIVE, queue_family_index_count: 0, p_queue_family_indices: 0x0, initial_layout: UNDEFINED } DEBUG [gfaestus::vulkan] Allocating 22861440 bytes of memory for image DEBUG [gfaestus::vulkan] Image created: 0x135646740 DEBUG [gfaestus::vulkan] Creating image ImageCreateInfo { s_type: IMAGE_CREATE_INFO, p_next: 0x0, flags: , image_type: TYPE_2D, format: B8G8R8A8_UNORM, extent: Extent3D { width: 3024, height: 1890, depth: 1 }, mip_levels: 1, array_layers: 1, samples: TYPE_1, tiling: OPTIMAL, usage: COLOR_ATTACHMENT, sharing_mode: EXCLUSIVE, queue_family_index_count: 0, p_queue_family_indices: 0x0, initial_layout: UNDEFINED } DEBUG [gfaestus::vulkan] Allocating 22861440 bytes of memory for image DEBUG [gfaestus::vulkan] Image created: 0x2d8e70950 DEBUG [gfaestus::vulkan] Creating image ImageCreateInfo { s_type: IMAGE_CREATE_INFO, p_next: 0x0, flags: , image_type: TYPE_2D, format: R32_UINT, extent: Extent3D { width: 3024, height: 1890, depth: 1 }, mip_levels: 1, array_layers: 1, samples: TYPE_4, tiling: OPTIMAL, usage: COLOR_ATTACHMENT | TRANSIENT_ATTACHMENT, sharing_mode: EXCLUSIVE, queue_family_index_count: 0, p_queue_family_indices: 0x0, initial_layout: UNDEFINED } DEBUG [gfaestus::vulkan] Allocating 22861440 bytes of memory for image DEBUG [gfaestus::vulkan] Image created: 0x136b0c280 DEBUG [gfaestus::vulkan] Creating image ImageCreateInfo { s_type: IMAGE_CREATE_INFO, p_next: 0x0, flags: , image_type: TYPE_2D, format: R32_UINT, extent: Extent3D { width: 3024, height: 1890, depth: 1 }, mip_levels: 1, array_layers: 1, samples: TYPE_1, tiling: OPTIMAL, usage: TRANSFER_SRC | COLOR_ATTACHMENT, sharing_mode: EXCLUSIVE, queue_family_index_count: 0, p_queue_family_indices: 0x0, initial_layout: UNDEFINED } DEBUG [gfaestus::vulkan] Allocating 22861440 bytes of memory for image DEBUG [gfaestus::vulkan] Image created: 0x1252537c0 DEBUG [gfaestus::vulkan] Creating image ImageCreateInfo { s_type: IMAGE_CREATE_INFO, p_next: 0x0, flags: , image_type: TYPE_2D, format: R8G8B8A8_UNORM, extent: Extent3D { width: 3024, height: 1890, depth: 1 }, mip_levels: 1, array_layers: 1, samples: TYPE_4, tiling: OPTIMAL, usage: COLOR_ATTACHMENT | TRANSIENT_ATTACHMENT, sharing_mode: EXCLUSIVE, queue_family_index_count: 0, p_queue_family_indices: 0x0, initial_layout: UNDEFINED } DEBUG [gfaestus::vulkan] Allocating 22861440 bytes of memory for image DEBUG [gfaestus::vulkan] Image created: 0x154754a20 DEBUG [gfaestus::vulkan] Creating image ImageCreateInfo { s_type: IMAGE_CREATE_INFO, p_next: 0x0, flags: , image_type: TYPE_2D, format: R8G8B8A8_UNORM, extent: Extent3D { width: 3024, height: 1890, depth: 1 }, mip_levels: 1, array_layers: 1, samples: TYPE_1, tiling: OPTIMAL, usage: SAMPLED | COLOR_ATTACHMENT, sharing_mode: EXCLUSIVE, queue_family_index_count: 0, p_queue_family_indices: 0x0, initial_layout: UNDEFINED } DEBUG [gfaestus::vulkan] Allocating 22861440 bytes of memory for image DEBUG [gfaestus::vulkan] Image created: 0x2d6b5ba90 DEBUG [gfaestus::vulkan] Creating image ImageCreateInfo { s_type: IMAGE_CREATE_INFO, p_next: 0x0, flags: , image_type: TYPE_2D, format: R8G8B8A8_UNORM, extent: Extent3D { width: 3024, height: 1890, depth: 1 }, mip_levels: 1, array_layers: 1, samples: TYPE_1, tiling: OPTIMAL, usage: SAMPLED | COLOR_ATTACHMENT, sharing_mode: EXCLUSIVE, queue_family_index_count: 0, p_queue_family_indices: 0x0, initial_layout: UNDEFINED } DEBUG [gfaestus::vulkan] Allocating 22861440 bytes of memory for image DEBUG [gfaestus::vulkan] Image created: 0x1252566c0 DEBUG [gfaestus::vulkan::render_pass] Chose node ID image format: R32_UINT DEBUG [gfaestus::vulkan] Creating image ImageCreateInfo { s_type: IMAGE_CREATE_INFO, p_next: 0x0, flags: , image_type: TYPE_2D, format: B8G8R8A8_UNORM, extent: Extent3D { width: 800, height: 600, depth: 1 }, mip_levels: 1, array_layers: 1, samples: TYPE_4, tiling: OPTIMAL, usage: COLOR_ATTACHMENT | TRANSIENT_ATTACHMENT, sharing_mode: EXCLUSIVE, queue_family_index_count: 0, p_queue_family_indices: 0x0, initial_layout: UNDEFINED } DEBUG [gfaestus::vulkan] Allocating 1920000 bytes of memory for image DEBUG [gfaestus::vulkan] Image created: 0x2d6b5a720 DEBUG [gfaestus::vulkan] Creating image ImageCreateInfo { s_type: IMAGE_CREATE_INFO, p_next: 0x0, flags: , image_type: TYPE_2D, format: B8G8R8A8_UNORM, extent: Extent3D { width: 800, height: 600, depth: 1 }, mip_levels: 1, array_layers: 1, samples: TYPE_1, tiling: OPTIMAL, usage: COLOR_ATTACHMENT, sharing_mode: EXCLUSIVE, queue_family_index_count: 0, p_queue_family_indices: 0x0, initial_layout: UNDEFINED } DEBUG [gfaestus::vulkan] Allocating 1920000 bytes of memory for image DEBUG [gfaestus::vulkan] Image created: 0x1547367c0 DEBUG [gfaestus::vulkan] Creating image ImageCreateInfo { s_type: IMAGE_CREATE_INFO, p_next: 0x0, flags: , image_type: TYPE_2D, format: R32_UINT, extent: Extent3D { width: 800, height: 600, depth: 1 }, mip_levels: 1, array_layers: 1, samples: TYPE_4, tiling: OPTIMAL, usage: COLOR_ATTACHMENT | TRANSIENT_ATTACHMENT, sharing_mode: EXCLUSIVE, queue_family_index_count: 0, p_queue_family_indices: 0x0, initial_layout: UNDEFINED } DEBUG [gfaestus::vulkan] Allocating 1920000 bytes of memory for image DEBUG [gfaestus::vulkan] Image created: 0x2d6b5c870 DEBUG [gfaestus::vulkan] Creating image ImageCreateInfo { s_type: IMAGE_CREATE_INFO, p_next: 0x0, flags: , image_type: TYPE_2D, format: R32_UINT, extent: Extent3D { width: 800, height: 600, depth: 1 }, mip_levels: 1, array_layers: 1, samples: TYPE_1, tiling: OPTIMAL, usage: TRANSFER_SRC | COLOR_ATTACHMENT, sharing_mode: EXCLUSIVE, queue_family_index_count: 0, p_queue_family_indices: 0x0, initial_layout: UNDEFINED } DEBUG [gfaestus::vulkan] Allocating 1920000 bytes of memory for image DEBUG [gfaestus::vulkan] Image created: 0x1369c6fa0 DEBUG [gfaestus::vulkan] Creating image ImageCreateInfo { s_type: IMAGE_CREATE_INFO, p_next: 0x0, flags: , image_type: TYPE_2D, format: R8G8B8A8_UNORM, extent: Extent3D { width: 800, height: 600, depth: 1 }, mip_levels: 1, array_layers: 1, samples: TYPE_4, tiling: OPTIMAL, usage: COLOR_ATTACHMENT | TRANSIENT_ATTACHMENT, sharing_mode: EXCLUSIVE, queue_family_index_count: 0, p_queue_family_indices: 0x0, initial_layout: UNDEFINED } DEBUG [gfaestus::vulkan] Allocating 1920000 bytes of memory for image DEBUG [gfaestus::vulkan] Image created: 0x154754a20 DEBUG [gfaestus::vulkan] Creating image ImageCreateInfo { s_type: IMAGE_CREATE_INFO, p_next: 0x0, flags: , image_type: TYPE_2D, format: R8G8B8A8_UNORM, extent: Extent3D { width: 800, height: 600, depth: 1 }, mip_levels: 1, array_layers: 1, samples: TYPE_1, tiling: OPTIMAL, usage: SAMPLED | COLOR_ATTACHMENT, sharing_mode: EXCLUSIVE, queue_family_index_count: 0, p_queue_family_indices: 0x0, initial_layout: UNDEFINED } DEBUG [gfaestus::vulkan] Allocating 1920000 bytes of memory for image DEBUG [gfaestus::vulkan] Image created: 0x2d6b5bd80 DEBUG [gfaestus::vulkan] Creating image ImageCreateInfo { s_type: IMAGE_CREATE_INFO, p_next: 0x0, flags: , image_type: TYPE_2D, format: R8G8B8A8_UNORM, extent: Extent3D { width: 800, height: 600, depth: 1 }, mip_levels: 1, array_layers: 1, samples: TYPE_1, tiling: OPTIMAL, usage: SAMPLED | COLOR_ATTACHMENT, sharing_mode: EXCLUSIVE, queue_family_index_count: 0, p_queue_family_indices: 0x0, initial_layout: UNDEFINED } DEBUG [gfaestus::vulkan] Allocating 1920000 bytes of memory for image DEBUG [gfaestus::vulkan] Image created: 0x135646740
Hi,
I installed MoltenVK and Vulkan on M1 Mac and
gfaestuscargo building seems very smooth. But when I run thegfaestuswith my graph, it display was all black and some weired thing displayed in the screen. I can choose the button.