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chfi / rs-gfa-utils

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gfa2vcf fails #9

Open zeeev opened 9 months ago

zeeev commented 9 months ago

Hi @chfi ,

I've used minigraph (minigraph -cxggs -t24) to generate a human genome graph. Extracting VCF fails with the following error:

gfautil -i input.gfa  gfa2vcf  2> junk
Error: InvalidLine(UintIdError, "S\ts1\tNNNNNNN [...] AAAAGATAA\tLN:i:126244\tSN:Z:chr1\tSO:i:0\tSR:i:0")