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chfi / waragraph

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cannot run the test data after installing #17

Open ttriche opened 1 year ago

ttriche commented 1 year ago 
(base) tim@thinkpad-P15:~/waragraph$ ./target/release/waragraph test/data/A-3105.fa.353ea42.34ee7b1.1576367.smooth.fix.gfa test/data/A-3105.layout.tsv 
[2023-05-26T14:15:52Z WARN  wgpu_hal::gles::egl] No config found!
[2023-05-26T14:15:52Z WARN  wgpu_hal::gles::egl] EGL says it can present to the window but not natively
[2023-05-26T14:15:52Z WARN  wgpu_hal::vulkan::instance] Disabling presentation on 'Intel(R) UHD Graphics (CML GT2)' (id 0x56338c6144a0) because of NV Optimus (on Linux)
parsed 6793 edges
thread 'main' panicked at 'index out of bounds: the len is 0 but the index is 0', /home/tim/.cargo/git/checkouts/raving-wgpu-26431015070e8629/7728766/src/lib.rs:87:30
note: run with `RUST_BACKTRACE=1` environment variable to display a backtrace

Good point, let's get a backtrace. 

# ... with RUST_BACKTRACE=1
stack backtrace:
   0: rust_begin_unwind
             at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/panicking.rs:584:5
   1: core::panicking::panic_fmt
             at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/core/src/panicking.rs:142:14
   2: core::panicking::panic_bounds_check
             at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/core/src/panicking.rs:84:5
   3: raving_wgpu::State::prepare_window
   4: waragraph::app::window::AppWindowState::init
   5: waragraph::app::App::init_viewer_1d
   6: waragraph::main
note: Some details are omitted, run with `RUST_BACKTRACE=full` for a verbose backtrace.

OK fine let's run the full backtrace out into a file. Surely the program won't completely skip STDERR and STDOUT!

(base) tim@thinkpad-P15:~/waragraph$ RUST_BACKTRACE=full ./target/release/waragraph test/data/A-3105.fa.353ea42.34ee7b1.1576367.smooth.fix.gfa test/data/A-3105.layout.tsv 2>&1 > backtrace_full.txt
[2023-05-26T14:18:50Z WARN  wgpu_hal::gles::egl] No config found!
[2023-05-26T14:18:50Z WARN  wgpu_hal::gles::egl] EGL says it can present to the window but not natively
[2023-05-26T14:18:50Z WARN  wgpu_hal::vulkan::instance] Disabling presentation on 'Intel(R) UHD Graphics (CML GT2)' (id 0x562a08fc01a0) because of NV Optimus (on Linux)
thread 'main' panicked at 'index out of bounds: the len is 0 but the index is 0', /home/tim/.cargo/git/checkouts/raving-wgpu-26431015070e8629/7728766/src/lib.rs:87:30
stack backtrace:
   0:     0x562a06e16a73 - std::backtrace_rs::backtrace::libunwind::trace::he0156af2558114c2
                               at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5
   1:     0x562a06e16a73 - std::backtrace_rs::backtrace::trace_unsynchronized::h1e2672bcf5105eb5
                               at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
   2:     0x562a06e16a73 - std::sys_common::backtrace::_print_fmt::haa919a14d8d859ec
                               at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/sys_common/backtrace.rs:66:5
   3:     0x562a06e16a73 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::hf15e8f9e6884dd5f
                               at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/sys_common/backtrace.rs:45:22
   4:     0x562a06e383fc - core::fmt::write::he42254d9e3c27115
                               at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/core/src/fmt/mod.rs:1202:17
   5:     0x562a06dfbfd5 - std::io::Write::write_fmt::hfb37e0ab3a125c66
                               at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/io/mod.rs:1679:15
   6:     0x562a06dff464 - std::sys_common::backtrace::_print::h8078bdb0e2e92b53
                               at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/sys_common/backtrace.rs:48:5
   7:     0x562a06dff464 - std::sys_common::backtrace::print::h09fd65486fb9c4f7
                               at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/sys_common/backtrace.rs:35:9
   8:     0x562a06dff464 - std::panicking::default_hook::{{closure}}::hb89b98c578903f40
                               at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/panicking.rs:295:22
   9:     0x562a06dff0a4 - std::panicking::default_hook::h27aa44be03b01ac8
                               at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/panicking.rs:314:9
  10:     0x562a06dffa43 - std::panicking::rust_panic_with_hook::he7013d2ea706cde0
                               at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/panicking.rs:698:17
  11:     0x562a06e17077 - std::panicking::begin_panic_handler::{{closure}}::hd66fe345adc7bed2
                               at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/panicking.rs:588:13
  12:     0x562a06e16bb4 - std::sys_common::backtrace::__rust_end_short_backtrace::ha2b47ffe9f27aed9
                               at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/sys_common/backtrace.rs:138:18
  13:     0x562a06dff732 - rust_begin_unwind
                               at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/panicking.rs:584:5
  14:     0x562a065ac513 - core::panicking::panic_fmt::hbfca70bd08ba6212
                               at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/core/src/panicking.rs:142:14
  15:     0x562a065ac452 - core::panicking::panic_bounds_check::had42be473306b825
                               at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/core/src/panicking.rs:84:5
  16:     0x562a06857830 - raving_wgpu::State::prepare_window::h8a616cb55d8d7b82
  17:     0x562a066d605d - waragraph::app::window::AppWindowState::init::h47ec9aaafdae7c31
  18:     0x562a0666c02c - waragraph::app::App::init_viewer_1d::h5323681411d8e33e
  19:     0x562a065d7eec - waragraph::main::h8cc159b85ba8d039
  20:     0x562a065d27e3 - std::sys_common::backtrace::__rust_begin_short_backtrace::h1200e36f5bd50f92
  21:     0x562a065e4159 - std::rt::lang_start::{{closure}}::hb709b23e8c87ff76
  22:     0x562a06dfb408 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h62af992155415807
                               at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/core/src/ops/function.rs:283:13
  23:     0x562a06dfb408 - std::panicking::try::do_call::hcfafbbba7d4f6a6c
                               at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/panicking.rs:492:40
  24:     0x562a06dfb408 - std::panicking::try::h7ee1bfcad42abe9b
                               at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/panicking.rs:456:19
  25:     0x562a06dfb408 - std::panic::catch_unwind::h009aa132eb8dd7d2
                               at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/panic.rs:137:14
  26:     0x562a06dfb408 - std::rt::lang_start_internal::{{closure}}::h93ae259af980c7d0
                               at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/rt.rs:148:48
  27:     0x562a06dfb408 - std::panicking::try::do_call::ha0627c997265a210
                               at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/panicking.rs:492:40
  28:     0x562a06dfb408 - std::panicking::try::h64a0afc1377cc785
                               at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/panicking.rs:456:19
  29:     0x562a06dfb408 - std::panic::catch_unwind::h1c61ea510b397b89
                               at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/panic.rs:137:14
  30:     0x562a06dfb408 - std::rt::lang_start_internal::ha75927e1903320fe
                               at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/rt.rs:148:20
  31:     0x562a065d8288 - main
  32:     0x7f062f629d90 - __libc_start_call_main
                               at ./csu/../sysdeps/nptl/libc_start_call_main.h:58:16
  33:     0x7f062f629e40 - __libc_start_main_impl
                               at ./csu/../csu/libc-start.c:392:3
  34:     0x562a065ac6f5 - _start
  35:                0x0 - <unknown>

Just kidding, it absolutely does skip STDERR and STDOUT :man_facepalming: .

backtrace_full.txt

chfi commented 1 year ago

Looks like it's trying and failing to use the Nvidia GPU instead of the integrated Intel chip. Dual GPU setups are always weird, but I just updated the dev branch to support the environment variables listed here: https://crates.io/crates/wgpu

On the latest dev, try setting WGPU_ADAPTER_NAME to Intel(R) UHD Graphics (CML GT2) so that the Intel adapter is preferred. If it still doesn't work, see if you can get the examples in the wgpu repo to work: https://github.com/gfx-rs/wgpu/wiki/Running-the-examples