search

chgibb / PHAT

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
https://chgibb.github.io/PHATDocs
GNU General Public License v3.0
17 stars 2 forks source link

Circular genome builder, high coverage gets cut off #328

Open RobJackson28 opened 7 years ago

RobJackson28 commented 7 years ago

See photo below, where high coverage gets cut-off (for alignment of e.g., R59_S11_L001_R2_001.fastq, R59_S11_L001_R1_001.fastq; hpv16_w12_ref.fasta). One way of getting around this is to log-scale the coverage values prior to plotting them. This is commonly done in coverage visualization.

image

RobJackson28 commented 7 years ago

Discussed this with @chgibb, log-scale/transform option should be added

RobJackson28 commented 5 years ago

Re-opening this as the current Coverage Depth Scale can be further enhanced with a log10-scale option