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chhylp123 / BitMapperBS

BitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing
Apache License 2.0
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error best_score: -196, scoreMax: -120 #21

Open YingYa opened 4 years ago

YingYa commented 4 years ago

Hi,

There is an error massage 'error best_score: -196, scoreMax: -120' from BitMapperBS, and then fail to run picard markduplicates with 'Read with refID -1 alignments (982243656, 982243755) are out of range for bam index Error: Failed to add read to bam index'.

The data was run successfully before.

What may be the issue?

chhylp123 commented 4 years ago

Is this a paired-end dataset or a single-end dataset?

YingYa commented 4 years ago

It is the paired-end dataset.