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chhylp123 / hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
MIT License
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with HIC mode #151

Open linshengnan09 opened 3 years ago

linshengnan09 commented 3 years ago

Hi, I want to run hic mode but I don't how to set parameters when I have two HIC libraries. Thanks!

chhylp123 commented 3 years ago

--h1/--h2 is used to feed Hi-C reads for phasing.

zuodabin commented 10 months ago

Dear author, I currently have data sets of HIFI and HIC. Is the assembly result of HIC and HIFI input together better than that of HIFI alone? I need the primary output

chhylp123 commented 10 months ago

If you only need the primary assembly, Hi-C+HiFi would be similar to HiFi-only.

zuodabin commented 10 months ago

Thank you. I think so, too. But I don't know if there is any difference in the assembly quality of the genome as a result of using the two methods发自我的 iPhone在 2024年1月2日，21:47，chhylp123 @.***> 写道： If you only need the primary assembly, Hi-C+HiFi would be similar to HiFi-only.

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