Open zhangrengang opened 2 years ago
Do you mean it is a misassembly or unexpected breakpoints?
It should be an unexpected breakpoint, as it is connected on the unitig graph and neighboured on the Hi-C heatmap.
The breakpoint is absent with another HiC dataset by a different enzyme.
The below is an example: the two chromosome-level haplotypes are continuous on the unitig graph, but in the final
The black lines indicate correspondences between unitigs and HiC-resolved contigs.
hic.p_ctg
, one unitig (charactered as “A”) is breaked.