Hi-C integrated assembly with no results

chhylp123 / hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

MIT License

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Hi-C integrated assembly with no results #301

Open cherryDAP opened 1 year ago

cherryDAP commented 1 year ago

Before, I only used the hifi data to run hifiasm and there were results, but recently I added the hic results to assemble, but no results were displayed. Looking at the log file does not report an error. I don't know where is the problem. Also, when I integrate the hic data, should I use the fa data that has been assembled before. e010fb42c3e49e99da210d974b1c689 d68bc04ed6d6d37b12d4df9b4cdc431

chhylp123 commented 1 year ago

Could you please show the command lines?

cherryDAP commented 1 year ago

nohup hifiasm -o sanyaOcu.asm -t45 --h1 SY1-F2-3_1.fq.gz --h2 SY1-F2-3_2.fq.gz SY.HiFi.fa.gz 1> SY.HiFi.log 2>SY.HiFi.err &