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chhylp123 / hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
MIT License
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Hexaploid genome assembly #435

Open xfcypeng opened 1 year ago

xfcypeng commented 1 year ago

HelIo, I used hifiasm -o rz.asm -t 30 --n-hap 4 --h1 read1.fq.gz --h2 read2.fq.gz hifi.fastq.gz to assemble a Hexaploid genome, didn't Distinguish haplotypes, would you tell me there will be 2 or 6 p_ctg.gfa in the result files and give me some suggestions? thanks very much.

chhylp123 commented 1 year ago

Sorry for the late reply. With --n-hap 6, the latest release will be able to give you 6 haplotypes. However, the results might be not idea. Please also remember to set the homozygous threshold correctly.