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chhylp123 / hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
MIT License
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Aborted run #499

Open hui-liu opened 1 year ago

hui-liu commented 1 year ago

Hi, I got errors when running hifiasm (0.19.5-r592): hifiasm: inter.cpp:16558: void gen_contain_consensus_chain(ul_vec_t, uint32_t, kv_ul_ov_t, kv_ul_ov_t, const ug_opt_t, const asg_t, R_to_U, int64_t, double, int64_t, Chain_Data*): Assertion `(mqs != ((uint64_t)-1)) && (mqe != ((uint64_t)-1)) && (mqe > mqs)' failed.

Here is the command line I used: hifiasm \ -o SDTS.asm \ -t 48 \ --ul ont.fq.gz \ --h1 read1.gz --h2 read2.gz \ hifi_reads.bam.fasta.gz

chhylp123 commented 1 year ago

Could you please share the bin files with me? It looks like a small bug which should be fixed soon.