Hi-C mode about the allotetraploid

chhylp123 / hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

MIT License

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Hi-C mode about the allotetraploid #572

Open twdawd opened 6 months ago

twdawd commented 6 months ago

Hi, developers I have a question that I would like to ask you. I am assembling an allotetraploid genome (AABB), using the Hi-C mode and obtaining two haplotypes (hap1 and hap2). Are these two haplotypes derived from the parents (one hap is AA and the other hap is BB)? Looking forward to your reply very much, thank you.

zhangyixing3 commented 6 months ago

hap1 AB , hap2 AB too.

twdawd commented 5 months ago

I see what you mean. Thank you very much.