search

chhylp123 / hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
MIT License
547 stars 87 forks source link

More checkpoints #598

Open mictadlo opened 10 months ago

mictadlo commented 10 months ago

Hi, Would it be possible to add more checkpoints to prevent restarting the jobs if not enough memory or wall time has been provided?

Many thanks for considering my request.

Best wishes,

Michal

JohnUrban commented 1 month ago

I second this.

Also, if there are already checkpoints, how can I restart from the last successful step? I keep having to start completely over, and it takes days before failure.

Thanks for the great tool! (But I am having trouble getting it to finish)

-John

Edited to add: HiFiasm can automatically detect completed bin files when re-run if need be..... See this comment: https://github.com/chhylp123/hifiasm/issues/608#issuecomment-1930107873 Also see comment about --bin-only flag: https://github.com/chhylp123/hifiasm/issues/608#issuecomment-1945403803