search

chhylp123 / hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
MIT License
547 stars 87 forks source link

output GFA with J lines in scaffolding mode #661

Open gf777 opened 5 months ago

gf777 commented 5 months ago

Hi, It would be useful if hifiasm could output a GFA with J lines representing gaps (rather than contigs with Ns) when run in scaffolding mode