Use p_ctg.fa and a_ctg.fa to fill the gaps of hap1.fa and hap2.fa?

chhylp123 / hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

MIT License

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Use p_ctg.fa and a_ctg.fa to fill the gaps of hap1.fa and hap2.fa? #692

Open DayTimeMouse opened 3 months ago

DayTimeMouse commented 3 months ago

Hi chhylp123,

In order to generate gap free haplotype genomes, I want to use p_ctg.fa and a_ctg.fa(Or assembly genome by another assembler) to fill the gaps of hap1.fa and hap2.fa(Like using RagTag patch function).

Whether this approach is feasible？

Best wishes.