How to replace a consensus reference with either haplotypes after asm?

chhylp123 / hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

MIT License

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How to replace a consensus reference with either haplotypes after asm? #696

Open Isoris opened 2 months ago

Isoris commented 2 months ago

Hello, I would like to use each phase set of contigs (either hic.hap1.p_ctg.fa or the other) to obtain a new sequence from a consensus assembly of the same genome, does anyone know how to do that? Thanks a lot~