This is my first time using hifiasm. The assembly I am building is an insect diploid genome of size 400Mb. The assembly is not contiguous (N50 value 210771), I read about tweaking parameters for improving the contiguity, I am also running blobtools to check for contaminants. I would like to take a look at the k-mer plot built by hifiasm but I do not have a log file output. How do I get a log file?
I used Genomescope and the plot is weird without any definite peaks.
Hello,
This is my first time using hifiasm. The assembly I am building is an insect diploid genome of size 400Mb. The assembly is not contiguous (N50 value 210771), I read about tweaking parameters for improving the contiguity, I am also running blobtools to check for contaminants. I would like to take a look at the k-mer plot built by hifiasm but I do not have a log file output. How do I get a log file?
I used Genomescope and the plot is weird without any definite peaks.