Hi,
I am trying to build the assembly for my haploid genome and have executed the following command:
hifiasm -o $OUTPUT_PREFIX -t $THREADS --hg-size 1.2g --n-hap 1 $HIFI_reads
but I am still getting the two haplotypes! Why this is so? Are there any additional parameters to direct hifiasm to build only haploid assembly?
Regards,
Amara
Hi, I am trying to build the assembly for my haploid genome and have executed the following command: hifiasm -o $OUTPUT_PREFIX -t $THREADS --hg-size 1.2g --n-hap 1 $HIFI_reads but I am still getting the two haplotypes! Why this is so? Are there any additional parameters to direct hifiasm to build only haploid assembly? Regards, Amara