Manual fixes of selected issues raised by lint

[mczyz-antmicro]

The following violations raised by verible-verilog-lint are fixed:

• module-parameter
• explicit-function-task-parameter-type
• unpacked-dimensions-range-ordering
• invalid-system-task-function
• package-filename
• plusarg-assignment
• module-parameter
• parameter-name-style

A waiver file to waive module-filename rule for libraries is added