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chklovski / CheckM2

Assessing the quality of metagenome-derived genome bins using machine learning
GNU General Public License v3.0
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checkmsum issue #80

Open francesco-ricci opened 12 months ago

francesco-ricci commented 12 months ago

Hello everyone,

after installing checkm2 with the following command: conda create -n checkm2 -c bioconda -c conda-forge checkm2 python=3.8

and running it with the following: checkm2 predict --threads 20 --input dereplicated_genome/ --output-directory checkm2 -x fa --database_path Funcgenes_51_Dec2021.dmnd

I get this ERROR: One of the files CheckM2 relies on has an incorrect checksum. Please re-download CheckM2.

Of course I reinstalled CheckM2 but without luck, this ERROR keeps happening.

Thanks for your help!

chklovski commented 11 months ago

Hi,

Does checkm2 testrun complete successfully? Are you using the default checkm2 diamond database?

brchn6 commented 3 months ago

Hi im not using the checkm2 diamond database rather different version (bur diamond db),

(checkm2) 12:35:04 🖤 barc@accessv02:~/Git_Clone_sss/checkm2 > diamond dbinfo --db /home/projects/zeevid/Data/Databases/blastdb/nr_tax/nr_tax.dmnd
diamond v2.0.4.142 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org

Database format version = 3
Diamond build = 153
Sequences = 526308523
Letters = 207134680681

Do you think that's making the error?