Closed iimog closed 6 years ago
I get the following error when running the full pipeline on an example dataset:
[17-08-15 13:50:57] [PipeWrap] Running 'ass': /projects/chloroExtractor/bin/assemble_spades.pl -1 kfr2_1.fq -2 kfr2_2.fq -o ass --threads 8 [17-08-15 13:51:45] [PipeWrap] Running 'fcg': /projects/chloroExtractor/bin/find_cyclic_graph.pl --in ass.fastg --out ass.fa Unable to load file: ass.fastg [17-08-15 13:51:45] [PipeWrap] fcg exited:512
Apparently the ass.fastg file is not present. However in the spades folder a assembly_graph.fastg file exists (I'm using spades version v3.8.1).
assembly_graph.fastg
I get the following error when running the full pipeline on an example dataset:
Apparently the ass.fastg file is not present. However in the spades folder a
assembly_graph.fastgfile exists (I'm using spades version v3.8.1).