Automatically pick ORF

[sonyahanson]

In the current rough ipynb the frame is picked manually, we want to do this automatically!

Possible useful tools people have already made:

• Manually find open reading frame: http://stackoverflow.com/questions/13114246/how-to-find-a-open-reading-frame-in-python and https://www.biostars.org/p/116405/
• Finding open reading frame with biopython: http://biopython.org/DIST/docs/tutorial/Tutorial.html#htoc296

[steven-albanese]

I still have to look through these tools, but maybe it would be a good idea to ask one of the bioinformatics people at MSKCC?

Just a thought for now