How to change sqm.out directory when using antechamber to convert pdb to mol2?

[mainguyenanhvu]

Hi,

I want to use antechamber to convert pdb file to mol2 by this command:

antechamber -fi pdb -i $work_path/ligand3.pdb -fo mol2 -o $work_path/ligand4.mol2 -c bcc -pf y

I would like to place sqm.out in the same directory of mol2. In this case, it needs placing in $work_path directory.

I do not know how to do this. Please help me. Thank you very much.

[hainm]

@mainguyenanhvu Please ask the question in mailing list: https://ambermd.org/MailingLists.php

[mainguyenanhvu]

Thank you very much.