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choderalab / assaytools

Modeling and Bayesian analysis of fluorescence and absorbance assays.
http://assaytools.readthedocs.org
GNU Lesser General Public License v2.1
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[WIP] Unifying and cleaning platereading #33

Closed sonyahanson closed 8 years ago

sonyahanson commented 8 years ago

Fixing this up a little up. Unifying data file reading functions to be used throughout assaytools. Right now 'platereader.py' exists, but is rarely used as its functionality is limited.

sonyahanson commented 8 years ago

Added grant.py, which for now just pulled all of the functions used to make the grant figures into one place. Makes the grant figure ipynbs (now in their own folder in examples) a lot cleaner. Hopefully a sign of things to come. This is an interim step to replacing platereader.py entirely.

sonyahanson commented 8 years ago

There are currently some straightup plotting functions in grant.py (eventually to replace platereader.py) which use a function that creates your dataframe without you explicitly having to make it. I was thinking of separating these and moving to plots.py, which is currently only used for the pymc plotting, and am not sure what makes sense here. plots.py seems pretty intense as is, and I think it was just a first rough pass to get things done..

jchodera commented 8 years ago

Awesome, thanks!

sonyahanson commented 8 years ago

Going to go ahead and merge this, even though I haven't separated out the plotting functions yet.

jchodera commented 8 years ago

OK!