choderalab / ensembler

Automated omics-scale protein modeling and simulation setup.
http://ensembler.readthedocs.io/
GNU General Public License v2.0
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Selecting protonation states? #33

Open jchodera opened 9 years ago

jchodera commented 9 years ago

Is it possible to manually specify which residues should be in different protonation states?

If so, would it be possible to add a note about this to the docs, or add an example? For example, selecting that the Asp of the DFG loop of ABL1 be in the protonated state would be a great example. (ASH instead of ASP).