choderalab / perses

Experiments with expanded ensembles to explore chemical space
http://perses.readthedocs.io
MIT License
179 stars 51 forks source link

Using SMARTS patterns to specify core atoms in mapping #1042

Open ijpulidos opened 2 years ago

ijpulidos commented 2 years ago

Users have expressed the desire to allow the specification of the core atoms using SMARTS patterns. This should allow a higher flexibility when dealing with ligands for which users know the shared core but we don't have them in the exact same position, for example.

ijpulidos commented 2 years ago

Related https://github.com/choderalab/perses/issues/800