choderalab / pinot

Probabilistic Inference for NOvel Therapeutics
MIT License
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Added data and some fixed ordering of human acquisitions. #119

Open miretchin opened 3 years ago

miretchin commented 3 years ago

For some reason the test failed for one of the python versions. I think this is a quirk in how the test was designed, because the error was that the graph used to test the neural network had "0 in-degree" and caused a DGL error. @yuanqing-wang any idea what is causing this?

as far as I know, there aren't even any changes made to the file train_and_test in this branch.

lgtm-com[bot] commented 3 years ago

This pull request introduces 1 alert when merging 57e35ab066f9367e235eff08bd610fc4210bc8dd into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

new alerts:

lgtm-com[bot] commented 3 years ago

This pull request introduces 3 alerts when merging 0c81cf73ae1aef3c645691b7aceb023e8f3fccbd into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

new alerts:

lgtm-com[bot] commented 3 years ago

This pull request introduces 3 alerts when merging f062240f19934cf9d711baf25319ebc6b4a2a2be into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

new alerts:

lgtm-com[bot] commented 3 years ago

This pull request introduces 2 alerts when merging 2915f78c58bfea80b86394b1351dd03e78855801 into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

new alerts:

lgtm-com[bot] commented 3 years ago

This pull request introduces 2 alerts when merging 9e18fb3a14e9e97089415bd38a2fe6e15f12cd37 into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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yuanqing-wang commented 3 years ago

For some reason the test failed for one of the python versions. I think this is a quirk in how the test was designed, because the error was that the graph used to test the neural network had "0 in-degree" and caused a DGL error. @yuanqing-wang any idea what is causing this?

as far as I know, there aren't even any changes made to the file train_and_test in this branch.

which data set/points cause that 0-degree? if you have a single-atom molecule it might be 0 in-deg

lgtm-com[bot] commented 3 years ago

This pull request introduces 2 alerts when merging 44260e9a0c5294c224223f37dfe99f6711d37695 into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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miretchin commented 3 years ago

It's just from the test in /app of train_and_test

On Sat, Oct 31, 2020, 10:10 PM Yuanqing Wang notifications@github.com wrote:

For some reason the test failed for one of the python versions. I think this is a quirk in how the test was designed, because the error was that the graph used to test the neural network had "0 in-degree" and caused a DGL error. @yuanqing-wang https://github.com/yuanqing-wang any idea what is causing this?

as far as I know, there aren't even any changes made to the file train_and_test in this branch.

which data set/points cause that 0-degree? if you have a single-atom molecule it might be 0 in-deg

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/choderalab/pinot/pull/119#issuecomment-720015430, or unsubscribe https://github.com/notifications/unsubscribe-auth/AADZLMTOQQYNX3JAV2EK3ALSNS7TBANCNFSM4S6M34AA .

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This pull request introduces 3 alerts when merging a44f813838fd69f4843c99db89b8f62e9d51c356 into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

new alerts:

lgtm-com[bot] commented 3 years ago

This pull request introduces 4 alerts when merging eb9418167ed3a6fa3d612107be6c00aa1329fa2b into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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lgtm-com[bot] commented 3 years ago

This pull request introduces 4 alerts when merging 39f4a9ef9dd4a7bc9956165630583e05155ab13d into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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This pull request introduces 4 alerts when merging 27bdd119efd7d02974a277f912e66d4f80623c33 into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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This pull request introduces 4 alerts when merging 6020b5a9a127e4bb5e3c2199c5abae5bdc0baa02 into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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lgtm-com[bot] commented 3 years ago

This pull request introduces 4 alerts when merging ac4df2d4ecb16bde57035f21ff426b97072df046 into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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lgtm-com[bot] commented 3 years ago

This pull request introduces 4 alerts when merging 8142cd2d1dcd992418a55d1a6262d6969d098014 into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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This pull request introduces 5 alerts when merging 2899c410de3627263afccd47e6448a2dfcba797e into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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lgtm-com[bot] commented 3 years ago

This pull request introduces 4 alerts when merging f8183139bdcd32d89662de3dd7173fa7bc7099cd into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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lgtm-com[bot] commented 3 years ago

This pull request introduces 4 alerts when merging df9c84dc5109680a5f072af977f4b296ca96a520 into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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lgtm-com[bot] commented 3 years ago

This pull request introduces 4 alerts when merging e59d67f54baf72d49a4336eb60d7deabfe77aada into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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This pull request introduces 4 alerts when merging 31c93a4fcc05e6700aebc6b3dfbf7be173ec3e0f into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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lgtm-com[bot] commented 3 years ago

This pull request introduces 4 alerts when merging 7824826b4af36b542afbd7feb0b7657036c1e583 into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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lgtm-com[bot] commented 3 years ago

This pull request introduces 4 alerts when merging 183a59749d8aa99838a8f8aa8fc860b09574fef5 into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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lgtm-com[bot] commented 3 years ago

This pull request introduces 4 alerts when merging 9f5df4fee5371d26a280740fa4df53d907e0f107 into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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lgtm-com[bot] commented 3 years ago

This pull request introduces 4 alerts when merging e3ae8344e557856107577d3ed04177efd838a6c8 into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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lgtm-com[bot] commented 3 years ago

This pull request introduces 4 alerts when merging b895415e6860cc83d210978dc5d8980102cd0ad3 into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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lgtm-com[bot] commented 3 years ago

This pull request introduces 4 alerts when merging 7b8522e21d7265f1db0a6fd52d90f717d7594360 into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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lgtm-com[bot] commented 3 years ago

This pull request introduces 4 alerts when merging 8c09cfebd17de2b03ab54065d06313c3b4a78591 into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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lgtm-com[bot] commented 3 years ago

This pull request introduces 4 alerts when merging 6ac25595727b02afefbb422a35c65adbbd5e82e4 into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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lgtm-com[bot] commented 3 years ago

This pull request introduces 4 alerts when merging 545e3772495124f883e561755284fbdfa51e87a7 into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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lgtm-com[bot] commented 3 years ago

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This pull request introduces 7 alerts when merging c0d17afe0536c211c1d737eab9b7fc22444eb854 into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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This pull request introduces 11 alerts when merging 18a4697cdb36c5cedaa1e582d0c1af364976c933 into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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This pull request introduces 11 alerts when merging 71e214e6b4208ae4a11c082e29ab3c390eceb8e9 into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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lgtm-com[bot] commented 3 years ago

This pull request introduces 11 alerts when merging 6be8dad4735efebebd3380f8b6176c464aaa1837 into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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lgtm-com[bot] commented 3 years ago

This pull request introduces 11 alerts when merging c7e5f3a19ca996c512ae6a85aae2968263a7f577 into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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This pull request introduces 12 alerts when merging d74a1f63682a889145a8e846d760990c6b882c3f into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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This pull request introduces 10 alerts when merging 763e30fca63c151ec899c816bc45c7e2d5bc392b into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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This pull request introduces 10 alerts when merging f52e479e589e03279a6b05d273443c0c8e175795 into 8a03838903c2ac3d09b3d7538040d3a8a33f32ae - view on LGTM.com

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