Semi-supervised model - Githubissues

choderalab / pinot

Probabilistic Inference for NOvel Therapeutics

MIT License

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Semi-supervised model #72

Closed dnguyen1196 closed 4 years ago

dnguyen1196 commented 4 years ago

Introduces two new classes: SemiSupervisedNet and SemiSupervisedGaussianProcesses for semi-supervised learning. Also with helper functions to process data into "semi-supervised" data.

SemiSupervisedNet inherits from Net and SemiSupervisedGaussianProcesses inherits from SemiSupervisedNet. The interface of these two classes follows very closely to Net. loss and condition function will have the same interface.

Other additions:

Functions to load covid moonshot with unlabeled data in pinot.data.moonshot_semi_small and pinot.data.moonshot_semi_all. Before calling these function, however, make sure that moonshot_activity_synthetic.txt (containing 58k synthetic molecules generated from activity.csv https://covid.postera.ai/covid) into the same directory level.

lgtm-com[bot] commented 4 years ago

This pull request introduces 8 alerts when merging 1ba7cb8cc31f9b53680f4bee0a1405da97b1d0a8 into c4b40e23b9d2108be6bd16c18a86aeb4ded0eafe - view on LGTM.com

new alerts:

7 for Unused import
1 for Unused local variable

lgtm-com[bot] commented 4 years ago

This pull request introduces 8 alerts when merging ffa01cd2035a5405329a9f4ae8afb46d27b9b075 into c4b40e23b9d2108be6bd16c18a86aeb4ded0eafe - view on LGTM.com

new alerts:

7 for Unused import
1 for Unused local variable

lgtm-com[bot] commented 4 years ago

This pull request introduces 8 alerts when merging 896c08eca051e02c16bce598ef0cad0b841869cd into c4b40e23b9d2108be6bd16c18a86aeb4ded0eafe - view on LGTM.com

new alerts:

7 for Unused import
1 for Unused local variable

lgtm-com[bot] commented 4 years ago

This pull request introduces 8 alerts when merging d91beb721bed75199673fd327798355bf107b86d into c4b40e23b9d2108be6bd16c18a86aeb4ded0eafe - view on LGTM.com

new alerts:

7 for Unused import
1 for Unused local variable

lgtm-com[bot] commented 4 years ago

This pull request introduces 8 alerts when merging 3bfa01087b7cbc1f521b21fccf6e59f0c0d5a5fb into c4b40e23b9d2108be6bd16c18a86aeb4ded0eafe - view on LGTM.com

new alerts:

7 for Unused import
1 for Unused local variable

lgtm-com[bot] commented 4 years ago

This pull request introduces 8 alerts when merging 4a262aa236edbfb7a3844b19cd528da300c87c95 into c4b40e23b9d2108be6bd16c18a86aeb4ded0eafe - view on LGTM.com

new alerts:

7 for Unused import
1 for Unused local variable