choishingwan / PRS-Tutorial

A tutorial on how to run basic polygenic risk score analysis
MIT License
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Confusion about "running PRS analysis" subsecion in PRSice-2 section #12

Closed MapleHe closed 3 years ago

MapleHe commented 3 years ago

Thank you for the excellent tutorial.

I'm a little confused with the content in the subsection "running PRS analysis" of the section "PRSice-2".

Should the first two R scripts generate EUR.covariate? Instead of EUR.cov.

In addition, the following PRSice-2 commands use EUR.cov, should it be EUR.covariate?

In the table of parameters, the value column of cov row is EUR.height. I think it should be EUR.covariate (or maybe EUR.cov).

choishingwan commented 3 years ago

Hi, thanks for reporting. I have now fixed the entry accordingly. The update should be up in a day or two