Open Sandyyy123 opened 2 years ago
pred_grid <- NULL for(chr in 1:22){ obj.bigSNP <- snp_attach(paste0("courage_eur.qc01_chr",chr,".rds")) genotype <- obj.bigSNP$genotypes ind.test <- 1:nrow(genotype) chr.idx <- which(info_snp$chr == chr) ind.chr <- info_snp$`_NUM_ID_`[chr.idx] tmp <- big_prodMat( genotype, beta_grid , ind.col = ind.chr) if(is.null(pred_grid)){ pred_grid <- tmp }else{ pred_grid <- pred_grid + tmp } }`
Tried beta_grid[ind.chr], but that also didnt work.