Hi, I am using the guidelines provided in your tutorial to calculate PGS in my dataset from already published PGS available in the catalogue. while in plink all runs well except for results are written in .*.profile. which I cannot find being created in my directory as described in your tutorial.

choishingwan / PRS-Tutorial

A tutorial on how to run basic polygenic risk score analysis

MIT License

68 stars 104 forks source link

Hi, I am using the guidelines provided in your tutorial to calculate PGS in my dataset from already published PGS available in the catalogue. while in plink all runs well except for results are written in .*.profile. which I cannot find being created in my directory as described in your tutorial. #34

Closed MehreenSoomro closed 2 years ago

MehreenSoomro commented 2 years ago

Hi, I am using the guidelines provided in your tutorial to calculate PGS in my dataset from already published PGS available in the catalogue. while in plink all runs well except for results are written in .*.profile. which I cannot find being created in my directory as described in your tutorial. I will be extremely grateful for any help provided regarding the issue. I have attached the screenshot.

choishingwan commented 2 years ago

plink's score function does not natively support gz files. You can try and decompress it before sending it to PLINK to run.

gunzip Abraham2.gz

Sam