choishingwan
commented
2 years ago Right, unless you are doing sample filtering, you can ignore that. I forgot to remove it from the script as this was originally an excerpt from my lassosum script that was used for other analyses
On Tue, Mar 1, 2022 at 4:49 PM Farshad Madani @.***> wrote:
Hi @choishingwan https://github.com/choishingwan
In the Lassosum, fam variable is generated through these codes:
fam <- fread(paste0(bfile, ".fam")) fam[,ID:=do.call(paste, c(.SD, sep=":")),.SDcols=c(1:2)]
but, there is no usage for 'fam' in the lassosum. Please clarify
Thank you, Farshad
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fmadani
Hi @choishingwan
In the Lassosum, fam variable is generated through these codes:
fam <- fread(paste0(bfile, ".fam")) fam[,ID:=do.call(paste, c(.SD, sep=":")),.SDcols=c(1:2)]
but, there is no usage for 'fam' in the lassosum. Please clarify
Thank you, Farshad