choishingwan
commented
2 years ago We just did a regression and find one resulting in highest R2.
use --print-snp to get the list
On Wed, Mar 9, 2022 at 10:53 AM dzimmerman-amc @.***> wrote:
Hi there,
I just wanted to ask how PRSice chooses the best model fit in the .summary file. I am using a binary trait and it seems to choose the the threshold of 1 is best fit with all of my SNPs inlcuded. Additionally, is it possible to get the list of actual SNPs that are included under the Num_SNP column.
Thanks in advance!
Best wishes, Dominic
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Hi there,
I just wanted to ask how PRSice chooses the best model fit in the .summary file. I am using a binary trait and it seems to choose the the threshold of 1 is best fit with all of my SNPs inlcuded. Additionally, is it possible to get the list of actual SNPs that are included under the Num_SNP column.
Thanks in advance!
Best wishes, Dominic