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choishingwan / PRS-Tutorial

A tutorial on how to run basic polygenic risk score analysis
MIT License
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Genome build test #42

Closed fmadani closed 2 years ago

fmadani commented 2 years ago

Hi Sam,

Would you clarify what mechanism/method/criteria are used to determine the genome build of a base/target dataset? Any source or comments or references are appreciated.

Thanks, Farshad

choishingwan commented 2 years ago

You mainly got that from your genotyping chip provider, and from the README of the summary statistics. You will know there are mismatch when you see large number of mismatch SNPs reported (usually due to difference in coordinates)