I am getting an error when running PRSice. It seems that it is not recognizing the phenotype file.
I am getting the following error:
`Phenotype file: pheno.csv
Column Name of Sample ID: FID+IID
Note: If the phenotype file does not contain a header, the
column name will be displayed as the Sample ID which is
expected.
There are a total of 1 phenotype to process
Start performing clumping
Clumping Progress: 100.00%
Number of variant(s) after clumping : 222137
Processing the 1 th phenotype
No phenotype presented
Error:
Execution halted`
I am getting an error when running PRSice. It seems that it is not recognizing the phenotype file. I am getting the following error:
I am running the following:
`PRSice_linux
Here is the first few lines of my phenotype file:
FID IID pheno 4 4 0.0 5 5 0.0 6 6 0.0 7 7 0.0 8 8 0.0 9 9 0.0 10 10 0.0 11 11 0.0 12 12 0.0
Everything looks good, I don't know why this error is popping? Thanks in advance