Closed Fnyasimi closed 2 years ago
--print-snp
You will need to filter by p-value though.
On Fri, Dec 17, 2021 at 1:23 PM Fnyasimi @.***> wrote:
@choishingwan https://github.com/choishingwan Thanks for the nice software.
I am wondering is there a way to extract the SNPs used in the best model instead of just the number of SNPs? I would like to find the specific SNPs for further analysis and mapping for downstream process. What would be the best way to extract these individual SNPs from the best fit model?
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The threshold p-value right. Thanks
correct
On Fri, Dec 17, 2021 at 1:29 PM Fnyasimi @.***> wrote:
The threshold p-value right. Thanks
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Thank you
Hi, when filtering for the best p-value threshold ( aka pT) to obtain the SNP list , do we filter as p < pT or p <= pT?
<=
On Sun, Mar 13, 2022 at 10:24 PM Michelle @.***> wrote:
Hi, when filtering for the best p-value threshold ( aka pT) to obtain the SNP list , do we filter as p < pT or p <= pT?
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@choishingwan Thanks for the nice software.
I am wondering is there a way to extract the SNPs used in the best model instead of just the number of SNPs? I would like to find the specific SNPs for further analysis and mapping for downstream process. What would be the best way to extract these individual SNPs from the best fit model?