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choishingwan / PRSice

A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
http://prsice.info
GNU General Public License v3.0
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[BUG]PRS model-fit #300

Open JY879013005 opened 2 years ago

JY879013005 commented 2 years ago

Describe the bug A clear and concise description of what the bug is. I have a question about the output result PRS model-fit hope to get help. I set a threshold interval of 5 × 10^5 to 0.5 with an increment of 5 × 10^5. But the results shown in the PRS model-fit result file ([Name].prsice) are only 241 instead of the 10000. The following figures are the log file and the output result file respectively.

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Thank you and best wishes!

Error Log Please always include the log file generated by PRSice.

To Reproduce If possible, provide a minimum working example for me to reproduce the problem. This can usually speed up the debugging process.

Additional context Add any other context about the problem here.

choishingwan commented 1 year ago

PRSice is lazy in that, if the next threshold does not include more SNPs, it will ignore that and move on. As a result of that, we won't see all the thresholds in the result file