Plotting PRSice results

[oalavijeh]

I have a binary trait and have generated a PRSice file.

I would like to plot this but work on a HPC environment where plotting doesn't really work.

I have tried following the code from here: https://choishingwan.github.io/PRS-Tutorial/plink_visual/ to turn the PRSice.summary score into a bar plot but I think because I haven't binned the P-values into slot the plot is supercongested (See screenshot).

How would I convert a PRSice.summary score into the "prs.result" file that would be needed to plot from your tutorial?

Many thanks

[choishingwan]

I don't know what you are trying to do. But if you have all the PRSice output, and you can download them to your local machine, then you can run --plot to do the plotting. You only need to result files for that, so you won't need to download the genotype data

[Janina24]

I have the same issue ... After running PRSice no plots are in the results

[choishingwan]

Log please?

On Thu, Oct 20, 2022, 1:36 AM janina_epi @.***> wrote:

I have the same issue ... After running PRSice no plots are in the results

— Reply to this email directly, view it on GitHub https://github.com/choishingwan/PRSice/issues/305#issuecomment-1284963474, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAJTRYRVHQF6ANVEXB3SYOTWEDK5ZANCNFSM6AAAAAARBLM4OA . You are receiving this because you commented.Message ID: @.***>

[Janina24]

AugUR2.log

[Janina24]

I´ve just fixed this issue! :)