Closed chollenbeck closed 8 years ago
Fixes bug that skips SNPs at first read position that has to do with the fact that Bio::Cigar is 1-indexed rather than 0-indexed.
Also added an option to specify whether only paired reads should be used for haplotyping.
Fixes bug that skips SNPs at first read position that has to do with the fact that Bio::Cigar is 1-indexed rather than 0-indexed.
Also added an option to specify whether only paired reads should be used for haplotyping.