chollenbeck / rad_haplotyper

MIT License
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Fixes bug that skips SNPs at first read position #15

Closed chollenbeck closed 8 years ago

chollenbeck commented 8 years ago

Fixes bug that skips SNPs at first read position that has to do with the fact that Bio::Cigar is 1-indexed rather than 0-indexed.

Also added an option to specify whether only paired reads should be used for haplotyping.