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chop-dbhi / data-models

Collection of various biomedical data models in parseable formats.
https://data-models-service.research.chop.edu
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Fix omop 5.0.0 #166

Closed murphyke closed 7 years ago

murphyke commented 7 years ago

The data-models-sqlalchemy service currently throws exceptions when trying to generate DDL for OMOP v5.

Although this DDL may not be of interest to anyone, we should nevertheless fix this so the continuous integration test builds are useful.

The errors are:

ERROR: no fields for table adt_occurrence
ERROR: no fields for table measurement_organism
ERROR: no fields for table visit_payer

These tables are listed in tables.csv, but there are no corresponding .csv files in definitions/. There must also be corresponding .csv files in schema/.

burrowse commented 7 years ago

Okay fixed @murphyke

gracebrownecodes commented 7 years ago

Just pushed an analogous commit to master, after noticing that the fix was only in Evanette's fork. Should be trickling down to the various services soon.