chop-dbhi / omop_harvest

OMOP CDMV4 data model with OSIM2 data in Harvest
https://eig.research.chop.edu/omop/
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Start PEDSnet development #7

Closed gracebrownecodes closed 10 years ago

gracebrownecodes commented 10 years ago

This commit breaks from previous development, which was toward a demo-able app built on the OSIM2 simulated dataset. The new development path is towards a production-capable app built on the OMOP CDMV4 data model for the PEDSnet Data Coordinating Center. In that spirit, this commit removes all migrations and starts over with new models, beginning with person, provider, care_site, organization, location, visit, condition, procedure, and drug. These models are intended to sit on top of materialized views, the code for which is in the PEDSnet DCC repo.

This commit also updates the project dependencies, including cilantro, and makes changes to the settings to accomodate the django-haystack upgrade. The base.html template is modified to include the bootstrap css files as cilantro is no longer packaged with them.

The main.js project bootstrap file is modified to customize the type of two fields (person_id and provider_id) as strings, in order to convince cilantro to use pick-list controls for those fields. The avocado datafields and dataconcepts are configured and stored in a fixture with paired metadata migration.

Fixes #4

Signed-off-by: Aaron Browne aaron0browne@gmail.com